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scnpilot_expt_750_p_scaffold_1324_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1324_curated_1
unknown

Not on your lists

2..121
DNA (120bp) protein (40aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1324_curated_2
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(379..1827)
DNA (1449bp) protein (483aa)
Arylsulfatase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G4T8_9SPHI
Arylsulfatase {ECO:0000313|EMBL:AIM39194.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
sulfatase
scnpilot_expt_750_p_scaffold_1324_curated_3
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1843..3624)
DNA (1782bp) protein (594aa)
RagB/SusD family protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FZB9_ECHVK
Putative outer membrane protein probably involved in nutrient binding {ECO:0000313|EMBL:CDS95464.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
RagB/SusD family protein
scnpilot_expt_750_p_scaffold_1324_curated_4
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3648..7109)
DNA (3462bp) protein (1154aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FYL6_ECHVK
Putative outer membrane protein, probably involved in nutrient binding {ECO:0000313|EMBL:CDS95468.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SusC/RagA family TonB-linked outer membrane protein
scnpilot_expt_750_p_scaffold_1324_curated_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7255..8289)
DNA (1035bp) protein (345aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niabella soli DSM 19437 RepID=H1NUK0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS95473.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
anti-FecI sigma factor FecR
scnpilot_expt_750_p_scaffold_1324_curated_6
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8374..8940)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM67_CHIPD
Putative RNA polymerase sigma-E factor {ECO:0000313|EMBL:CDS95477.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_expt_750_p_scaffold_1324_curated_7
unknown

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8965..9198
DNA (234bp) protein (78aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1324_curated_8
Streptomyces sp. NTK 937, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9305..9625)
DNA (321bp) protein (107aa)
hmp; Putative hemoglobine-related protein Hmp, putative ketosteroid-9-alpha-hydroxylase (EC:1.-.-.-)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003783A1E
3-ketosteroid-9-alpha-hydroxylase {ECO:0000313|EMBL:KDQ70899.1}; TaxID=1487711 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NTK 937.;"
scnpilot_expt_750_p_scaffold_1324_curated_9
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9711..9932)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X482_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05128.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
thioredoxin
scnpilot_expt_750_p_scaffold_1324_curated_10
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9960..10754)
DNA (795bp) protein (265aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthetase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSX2_LEAB4
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ADQ16811.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_expt_750_p_scaffold_1324_curated_11
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10755..10856)
DNA (102bp) protein (34aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthetase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSX2_LEAB4
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ADQ16811.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_expt_750_p_scaffold_1324_curated_12
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10878..11378)
DNA (501bp) protein (167aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSX3_LEAB4
cupin 2 conserved barrel domain protein
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADQ16812.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_expt_750_p_scaffold_1324_curated_13
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11478..12899
DNA (1422bp) protein (474aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSX4_LEAB4
transcriptional regulator, gntr family with aminotransferase domain; K00375 GntR family transcriptional regulator / MocR family aminotransferase
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:ADQ16813.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_expt_750_p_scaffold_1324_curated_14
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13412..14005
DNA (594bp) protein (198aa)
RNA polymerase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6FFBA
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHW60600.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_expt_750_p_scaffold_1324_curated_15
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14051..15226
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI000318EB47
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ADY51364.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_expt_750_p_scaffold_1324_curated_16
Prevotella baroniae, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15385..18675
DNA (3291bp) protein (1097aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003697C16
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:ERK38208.1}; TaxID=1115809 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella baroniae F0067.;"
SusC/RagA family TonB-linked outer membrane protein
scnpilot_expt_750_p_scaffold_1324_curated_17
Bacteroides sp. CAG:714, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18687..20165
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Bacteroides barnesiae RepID=UPI0003645B4B
RagB/SusD domain-containing protein {ECO:0000313|EMBL:CDD31978.1}; TaxID=1262749 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:714.;"
RagB/SusD family protein
scnpilot_expt_750_p_scaffold_1324_curated_18
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20152..21555
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002D5A6E8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAR02038.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
scnpilot_expt_750_p_scaffold_1324_curated_19
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21542..22345
DNA (804bp) protein (268aa)
Arylsulfatase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNW4_9SPHI
Putative secreted sulfatase ydeN {ECO:0000313|EMBL:CDS94581.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
sulfatase
Displaying 19 items

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