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scnpilot_expt_750_p_scaffold_1055_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1055_curated_1
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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441..1874
DNA (1434bp) protein (478aa)
DNA repair ATPase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4192B
ABC transporter
ABC transporter {ECO:0000313|EMBL:ADY51843.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_expt_750_p_scaffold_1055_curated_2
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2115..5759)
DNA (3645bp) protein (1215aa)
Membrane protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P0L3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK58129.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_3
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5752..6636)
DNA (885bp) protein (295aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFK58130.1}; EC=3.6.3.- {ECO:0000313|EMBL:EFK58130.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
Multidrug ABC transporter ATPase n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P6V0_9SPHI
abc transporter related protein
scnpilot_expt_750_p_scaffold_1055_curated_4
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7106..7504)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBD2_SPHS2
Contig7, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78714.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_5
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7517..7966)
DNA (450bp) protein (150aa)
ATPase n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0N132_9SPHI
Polyketide cyclase {ECO:0000313|EMBL:AIM38314.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_6
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8061..8483)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBD0_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ81541.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_expt_750_p_scaffold_1055_curated_7
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8546..8968)
DNA (423bp) protein (141aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBC9_SPHS2
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ADZ81540.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_expt_750_p_scaffold_1055_curated_8
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9104..10093
DNA (990bp) protein (330aa)
Transcriptional regulator, AraC family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G3P3_9SPHI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEI90248.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
AraC family transcriptional regulator
scnpilot_expt_750_p_scaffold_1055_curated_9
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(10156..11958)
DNA (1803bp) protein (601aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9F9_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ29964.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_10
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(11979..14687)
DNA (2709bp) protein (903aa)
magnesium-translocating P-type ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
Magnesium-transporting ATPase n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J4R7_9SPHI
Magnesium ABC transporter ATPase {ECO:0000313|EMBL:KFF17500.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
scnpilot_expt_750_p_scaffold_1055_curated_11
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14752..15456)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2IY79_9SPHI
Magnesium transporter MgtC {ECO:0000313|EMBL:KFF17501.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
scnpilot_expt_750_p_scaffold_1055_curated_12
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15681..16157
DNA (477bp) protein (159aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XS88_PEDHD
alkylhydroperoxidase-like protein
scnpilot_expt_750_p_scaffold_1055_curated_13
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16198..16536
DNA (339bp) protein (113aa)
YCII-related n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XS87_PEDHD
hypothetical protein
YCII-related {ECO:0000313|EMBL:ACU03432.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_expt_750_p_scaffold_1055_curated_14
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16591..17832
DNA (1242bp) protein (414aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XS86_PEDHD
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ACU03431.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_expt_750_p_scaffold_1055_curated_15
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17841..18374)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1ABK8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:AIM38335.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
scnpilot_expt_750_p_scaffold_1055_curated_16
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18379..18912)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HQC0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ57662.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_17
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19113..19931
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L5D3_ZOBGA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ96177.1}; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
scnpilot_expt_750_p_scaffold_1055_curated_18
Cellulophaga lytica, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20130..21218
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RF47_CELLC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY31063.1}; TaxID=867900 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC; 14961 / NCIMB 1423 / VKM B-1433 / Cy l20).;"
scnpilot_expt_750_p_scaffold_1055_curated_19
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21316..21876
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W930_9FLAO
ATPase {ECO:0000313|EMBL:KGO08689.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
P-loop containing nucleoside triphosphate hydrolase
scnpilot_expt_750_p_scaffold_1055_curated_20
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21870..22448)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VXQ5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF18997.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_21
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22441..23160)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MKW7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT06047.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
scnpilot_expt_750_p_scaffold_1055_curated_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23422..23844
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037111E0
Uncharacterized protein {ECO:0000313|EMBL:KIC91673.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative redox protein, regulator of disulfide bond formation
scnpilot_expt_750_p_scaffold_1055_curated_23
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23963..24277
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7R7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEJ68708.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1055_curated_24
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24408..25286
DNA (879bp) protein (293aa)
Tat pathway signal sequence domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7R9_9FLAO
Quercetin 2,3-dioxygenase {ECO:0000313|EMBL:CEJ68711.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
pirin-like protein; K06911
scnpilot_expt_750_p_scaffold_1055_curated_25
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25364..29230)
DNA (3867bp) protein (1289aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 RepID=U6RNM0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA57632.1}; TaxID=1121098 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM; 13223.;"
glycosyl hydrolase
Displaying 25 items

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