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scnpilot_expt_750_p_scaffold_427_curated

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Displaying items 1-30 of 139 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_427_curated_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..120)
DNA (120bp) protein (40aa)
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1]
argininosuccinate lyase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037670D5
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_750_p_scaffold_427_curated_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138..1184
DNA (1047bp) protein (349aa)
two-component system sensor ATPase; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3]
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037F1DCD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_p_scaffold_427_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1141..1911
DNA (771bp) protein (257aa)
LytR/AlgR family transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR id=12494527 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
LytR/AlgR family transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR
Response regulator receiver domain protein (CheY) {ECO:0000313|EMBL:AAZ96184.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_750_p_scaffold_427_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2096..2719
DNA (624bp) protein (208aa)
hypothetical protein; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
NUDIX hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI000364008F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_p_scaffold_427_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2738..6424)
DNA (3687bp) protein (1229aa)
metH; B12-dependent methionine synthase (EC:2.1.1.13); K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
methionine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D6956
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:AAZ96187.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_750_p_scaffold_427_curated_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6695..7081
DNA (387bp) protein (129aa)
Rhodanese-like protein id=1312389 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7126..8157)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A8D27
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_p_scaffold_427_curated_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8154..9644)
DNA (1491bp) protein (497aa)
Fis family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000361D35B
Mg chelatase-like protein; K07391 magnesium chelatase family protein
Mg chelatase-related protein {ECO:0000313|EMBL:AAZ96190.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_750_p_scaffold_427_curated_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9649..9912)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378E01C
hypothetical protein; K09806 hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_p_scaffold_427_curated_10
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10154..10846
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C2384
Transmembrane protein {ECO:0000313|EMBL:ENO77306.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
transmembrane protein
scnpilot_expt_750_p_scaffold_427_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10865..11203
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Thiobacillus thioparus RepID=UPI0003802BA8
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_p_scaffold_427_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11214..12596
DNA (1383bp) protein (461aa)
ammonia channel protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003715393
ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_750_p_scaffold_427_curated_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12653..13324)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F8B3B
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_750_p_scaffold_427_curated_14
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13672..14157
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000373B388
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
scnpilot_expt_750_p_scaffold_427_curated_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14203..14415
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F0241
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_750_p_scaffold_427_curated_16
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14424..16586
DNA (2163bp) protein (721aa)
Cu2+-exporting ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase P n=1 Tax=Thauera sp. 27 RepID=N6Y9I9_9RHOO
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:BAO28414.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
scnpilot_expt_750_p_scaffold_427_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16654..17529
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003739FEA
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17532..18584
DNA (1053bp) protein (351aa)
homoserine O-succinyltransferase (EC:2.3.1.46); K00651 homoserine O-succinyltransferase [EC:2.3.1.46]
homoserine O-succinyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CD9ED
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18581..19675
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003672415
ABC transporter permease; K02066 putative ABC transport system permease protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19675..20442
DNA (768bp) protein (256aa)
toluene ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367C5EC
ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20432..21379
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F5D3C
ABC-type transport system periplasmic component; K02067 putative ABC transport system substrate-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21376..21978
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003607F93
putative lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_p_scaffold_427_curated_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22026..22454
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003701750
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22520..23200)
DNA (681bp) protein (227aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000373FE94
hypothetical protein; K09792 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23197..24561)
DNA (1365bp) protein (455aa)
Putative transport transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SM44_THIDA
putative transport transmembrane protein; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
Putative transport transmembrane protein {ECO:0000313|EMBL:AAZ96206.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_750_p_scaffold_427_curated_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24558..25337)
DNA (780bp) protein (260aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Thiobacillus thioparus RepID=UPI00036B3EF3
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25366..26004
DNA (639bp) protein (213aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
Orotate phosphoribosyltransferase id=1355128 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25943..26590
DNA (648bp) protein (216aa)
Putative uncharacterized protein id=1355127 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26643..28073)
DNA (1431bp) protein (477aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B id=1355126 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_p_scaffold_427_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28145..29620)
DNA (1476bp) protein (492aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI000365314F
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 139 in total

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