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scnpilot_solids2_trim150_scaffold_3038

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3038_1
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..151)
-----------------
DNA (150bp)
protein (50aa)
Uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=K1NLX2_KLEPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIX76292.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
scnpilot_solids2_trim150_scaffold_3038_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(148..1356)
-----------------
DNA (1209bp)
protein (403aa)
nicotinate phosphoribosyltransferase (EC:2.4.2.11); K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
nicotinate phosphoribosyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI000377220F
scnpilot_solids2_trim150_scaffold_3038_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1489..2979)
-----------------
DNA (1491bp)
protein (497aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQZ6_9RHIZ rbh
scnpilot_solids2_trim150_scaffold_3038_4
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3461..4030
-----------------
DNA (570bp)
protein (190aa)
Cold-shock DNA-binding domain protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELC1_METSB
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ACK49510.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_3038_5
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4166..5353)
-----------------
DNA (1188bp)
protein (396aa)
CoA-transferase family III protein {ECO:0000313|EMBL:EFH11381.1}; EC=2.8.3.16 {ECO:0000313|EMBL:EFH11381.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000363B4E1 rbh
scnpilot_solids2_trim150_scaffold_3038_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5455..6177
-----------------
DNA (723bp)
protein (241aa)
Transcriptional regulator, GntR family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RMT3_9PROT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFH11380.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_3038_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6245..7309
-----------------
DNA (1065bp)
protein (355aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036B6EA0 rbh
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
scnpilot_solids2_trim150_scaffold_3038_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7446..7889
-----------------
DNA (444bp)
protein (148aa)
ABC transporter, permease protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV17_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EHM03185.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
binding-protein-dependent transport systems inner membrane component
Displaying 8 items

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