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scnpilot_solids2_trim150_scaffold_3060

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3060_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..134)
-----------------
DNA (132bp)
protein (44aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E1_9GAMM
scnpilot_solids2_trim150_scaffold_3060_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(246..608)
-----------------
DNA (363bp)
protein (121aa)
PsiF repeat family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG4_9GAMM
PsiF repeat family protein {ECO:0000313|EMBL:EIL97855.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
psiF repeat protein
scnpilot_solids2_trim150_scaffold_3060_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(753..2249)
-----------------
DNA (1497bp)
protein (499aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36)
Ornithine/acetylornithine aminotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG3_9GAMM rbh
Ornithine/acetylornithine aminotransferase {ECO:0000313|EMBL:EIL97854.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_3060_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2538..3467
-----------------
DNA (930bp)
protein (310aa)
Putative ATP binding component of ABC transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WNR8_9GAMM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:AGG88217.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3060_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3469..4260
-----------------
DNA (792bp)
protein (264aa)
ABC transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG1_9GAMM rbh
ABC transporter {ECO:0000313|EMBL:EIL97852.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type multidrug transport system, permease component rbh
scnpilot_solids2_trim150_scaffold_3060_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4303..5532
-----------------
DNA (1230bp)
protein (410aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG0_9GAMM rbh
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EIL97851.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
signal transduction histidine kinase rbh
scnpilot_solids2_trim150_scaffold_3060_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5529..6131
-----------------
DNA (603bp)
protein (201aa)
LuxR family two-component response regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF9_9GAMM rbh
LuxR family two-component response regulator {ECO:0000313|EMBL:EIL97850.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain rbh
scnpilot_solids2_trim150_scaffold_3060_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6196..7227
-----------------
DNA (1032bp)
protein (344aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF8_9GAMM rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
scnpilot_solids2_trim150_scaffold_3060_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7387..7842
-----------------
DNA (456bp)
protein (152aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF7_9GAMM
Displaying 9 items

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