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scnpilot_solids2_trim150_scaffold_3128

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3128_1
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..930)
DNA (930bp) protein (310aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
cysteine synthase A (EC:2.5.1.47); K01738 cysteine synthase A [EC:2.5.1.47] rbh
Cysteine synthase B n=1 Tax=Gordonia neofelifaecis NRRL B-59395 RepID=F1YFS8_9ACTO rbh
scnpilot_solids2_trim150_scaffold_3128_2
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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1448..2059
DNA (612bp) protein (204aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nocardioides sp. CF8 RepID=R7Y1U3_9ACTO
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EON25587.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
short-chain dehydrogenase
scnpilot_solids2_trim150_scaffold_3128_3
BJP_IG2157_Actinomycetales_63_19, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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2405..3772
DNA (1368bp) protein (456aa)
SAM-dependent methlyltransferase n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237A14E rbh
hypothetical protein rbh
Tax=BJP_IG2157_Actinomycetales_63_19
scnpilot_solids2_trim150_scaffold_3128_4
BJP_IG2157_Actinomycetales_63_19, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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3741..4661
DNA (921bp) protein (307aa)
type II restriction endonuclease XamI n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237A14F rbh
type II restriction enzyme XamI
Tax=BJP_IG2157_Actinomycetales_63_19
scnpilot_solids2_trim150_scaffold_3128_5
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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4765..5538
DNA (774bp) protein (258aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RU59_BLASD
hemerythrin hhE cation binding domain-containing protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:CCG05666.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
scnpilot_solids2_trim150_scaffold_3128_6
unknown

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comp(5441..6160)
DNA (720bp) protein (240aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_3128_7

Not on your lists

6207..6566
DNA (360bp) protein (120aa)
diphosphomevalonate decarboxylase (EC:4.1.1.33)
diphosphomevalonate decarboxylase n=1 Tax=Nevskia ramosa RepID=UPI0003B66EC8
Mevalonate diphosphate decarboxylase {ECO:0000313|EMBL:EQD46760.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids2_trim150_scaffold_3128_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6563..7633
DNA (1071bp) protein (357aa)
Mevalonate kinase n=3 Tax=Rhodanobacter denitrificans RepID=M4NUA0_9GAMM
mevalonate kinase
Mevalonate kinase {ECO:0000313|EMBL:AGG90996.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3128_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7690..10053
DNA (2364bp) protein (788aa)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.88 {ECO:0000256|RuleBase:RU361219};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC:1.1.1.34 2.7.1.36)
Hydroxymethylglutaryl-CoA reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUG9_9GAMM
scnpilot_solids2_trim150_scaffold_3128_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10050..10634
DNA (585bp) protein (195aa)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate Delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00202};; IPP:DMAPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUH0_9GAMM
scnpilot_solids2_trim150_scaffold_3128_11
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(10680..10871)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Gordonia malaquae NBRC 108250 RepID=M3TK68_9ACTO
CsbD-like protein {ECO:0000313|EMBL:AHH18556.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
CsbD family protein
scnpilot_solids2_trim150_scaffold_3128_12
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10961..11944)
DNA (984bp) protein (328aa)
Lipoprotein LpqB, GerMN domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0R8_PSEUX
Uncharacterized protein {ECO:0000313|EMBL:KEP24345.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
lipoprotein LpqB, GerMN domain-containing protein
scnpilot_solids2_trim150_scaffold_3128_13
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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12346..13503
DNA (1158bp) protein (386aa)
HNH endonuclease n=1 Tax=Frankia sp. CN3 RepID=G6HNA3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KDS87207.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
HNH endonuclease
scnpilot_solids2_trim150_scaffold_3128_14
unknown

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13500..13814
DNA (315bp) protein (105aa)

This feature has no annotations

Displaying 14 items

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