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scnpilot_solids2_trim150_scaffold_2017

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2017_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..758)
DNA (756bp) protein (252aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BJF3_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05236.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(763..1248)
DNA (486bp) protein (162aa)
Copper-binding protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX5_OLICM rbh
copper-binding protein rbh
Copper-binding protein {ECO:0000313|EMBL:AEI08219.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1313..2713)
DNA (1401bp) protein (467aa)
Twin-arginine translocation pathway signal n=3 Tax=Oligotropha carboxidovorans RepID=B6JJY6_OLICO rbh
twin-arginine translocation pathway signal rbh
Multicopper oxidase, TAT pathway translocated {ECO:0000313|EMBL:AEI05234.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2713..4173)
DNA (1461bp) protein (487aa)
Outer membrane efflux protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJY7_OLICO rbh
outer membrane efflux protein rbh
Outer membrane efflux protein {ECO:0000313|EMBL:AEI05233.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4183..4482)
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX2_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08216.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4562..5122)
DNA (561bp) protein (187aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JJY9_OLICO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI08215.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5123..5398)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJZ0_OLICO
hypothetical protein
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52671.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
scnpilot_solids2_trim150_scaffold_2017_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5452..7899
DNA (2448bp) protein (816aa)
cation translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Cation translocating P-type ATPase n=2 Tax=Oligotropha carboxidovorans RepID=F8BJE6_OLICM rbh
Cation translocating P-type ATPase {ECO:0000313|EMBL:AEI05229.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7993..10050)
DNA (2058bp) protein (686aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9T2_OLICO rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05228.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_2017_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10364..11275)
DNA (912bp) protein (304aa)
Lytic transglycosylase, catalytic n=2 Tax=Oligotropha carboxidovorans RepID=B6J9T3_OLICO rbh
putative transglycosylase rbh
Putative transglycosylase {ECO:0000313|EMBL:AEI05227.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11280..11615)
DNA (336bp) protein (112aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9T4_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05226.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2017_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11682..11771)
DNA (90bp) protein (30aa)
Peptidase S26, conserved region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4G5_9BRAD
Conjugal transfer peptidase TraF {ECO:0000313|EMBL:CEG06697.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
conjugal transfer protein
Displaying 12 items

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