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scnpilot_solids2_trim150_scaffold_2133

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2133_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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239..2047
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000380FF8D rbh
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2133_2
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2425..2805
DNA (381bp) protein (127aa)
membrane protein n=1 Tax=Pedobacter agri RepID=UPI00029A9F31
Membrane protein {ECO:0000313|EMBL:AKD03082.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2133_3
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(2918..3229)
DNA (312bp) protein (104aa)
XRE family transcriptional regulator id=4923351 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
putative transcriptional regulator with C-terminal CBS domains
Tax=GWA2_Bacteroidetes_32_17_curated
scnpilot_solids2_trim150_scaffold_2133_4
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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comp(3201..3395)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IZN8_CYCMS
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
scnpilot_solids2_trim150_scaffold_2133_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(3468..3995)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036BC7FE
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2133_6
unknown

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comp(4116..5054)
DNA (939bp) protein (313aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2133_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5150..6220)
DNA (1071bp) protein (357aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
tetraacyldisaccharide 4'-kinase; K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000380DEDD
scnpilot_solids2_trim150_scaffold_2133_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6410..6985)
DNA (576bp) protein (192aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y4M0_9SPHI
scnpilot_solids2_trim150_scaffold_2133_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6982..7611)
DNA (630bp) protein (210aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336, ECO:0000256|SAAS:SAAS00089806};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
dethiobiotin synthetase; K01935 dethiobiotin synthetase [EC:6.3.3.3]
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAC6_CHIPD
scnpilot_solids2_trim150_scaffold_2133_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7624..8163)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMN1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14653.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2133_11
unknown

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comp(8154..8981)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003600D5C
scnpilot_solids2_trim150_scaffold_2133_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9172..9588
DNA (417bp) protein (139aa)
nucleoside-diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Nucleoside diphosphate kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUY9_CHIPD
scnpilot_solids2_trim150_scaffold_2133_13
candidate division Zixibacteria, Bacteria

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comp(9656..9853)
DNA (198bp) protein (66aa)
id=1251242 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Uncharacterized protein {ECO:0000313|EMBL:EQB64105.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
scnpilot_solids2_trim150_scaffold_2133_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9928..10806)
DNA (879bp) protein (293aa)
GumN family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEF9_NIAKG
GumN family protein; K09973 hypothetical protein
GumN family protein {ECO:0000313|EMBL:AEV98369.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 14 items

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