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scnpilot_solids2_trim150_scaffold_2268

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2268_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..751
DNA (750bp) protein (250aa)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCP3_AFIFE
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS28352.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
sufI; multicopper oxidase
scnpilot_solids2_trim150_scaffold_2268_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(905..1363)
DNA (459bp) protein (153aa)
MerR family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFK1_RHIRD
Transcriptional regulator {ECO:0000313|EMBL:KKB84709.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
transcriptional regulator, MerR family
scnpilot_solids2_trim150_scaffold_2268_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1422..3923)
DNA (2502bp) protein (834aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Heavy metal translocating P-type ATPase Metabolism n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VC70_9RHIZ rbh
Heavy metal translocating P-type ATPase Metabolism {ECO:0000313|EMBL:ENN88607.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
scnpilot_solids2_trim150_scaffold_2268_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4085..4279
DNA (195bp) protein (65aa)
Heavy metal transport/detoxification protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFK3_RHIRD
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:EGP54508.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
heavy metal transport/detoxification protein; K07213 copper chaperone
scnpilot_solids2_trim150_scaffold_2268_5
unknown

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4294..4425
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2268_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4467..4991
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH43_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28356.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2268_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5277..5543)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ13_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31216.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2268_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5682..5936
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BGW0_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI04999.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2268_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6000..6326
DNA (327bp) protein (109aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BGW1_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05000.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_2268_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6329..6994
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRZ6_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31219.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
signal transduction response regulator rbh
scnpilot_solids2_trim150_scaffold_2268_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6991..8352
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Sensor histidine kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM4_OLICO rbh
signal transduction histidine kinase rbh
scnpilot_solids2_trim150_scaffold_2268_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8371..9729)
DNA (1359bp) protein (453aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMI5_AFIFE rbh
two-component hybrid sensor and regulator rbh
scnpilot_solids2_trim150_scaffold_2268_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9735..10628)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTS3_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29638.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
two component transcriptional regulator rbh
Displaying 13 items

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