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scnpilot_solids2_trim150_scaffold_2422

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2422_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..410
DNA (408bp) protein (136aa)
hypothetical protein; K00316 spermidine dehydrogenase [EC:1.5.99.6]
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z619_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59801.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
scnpilot_solids2_trim150_scaffold_2422_2
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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457..1740
DNA (1284bp) protein (428aa)
FucP protein n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RYV7_XANCB
Fucose permease {ECO:0000313|EMBL:KGK55936.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
fucose permease; K02429 MFS transporter, FHS family, L-fucose permease
scnpilot_solids2_trim150_scaffold_2422_3
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1804..2640
DNA (837bp) protein (279aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L341_FRAAD
aldo/keto reductase, diketogulonate reductase
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:AFC84839.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids2_trim150_scaffold_2422_4
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2649..3641
DNA (993bp) protein (331aa)
Fructokinase n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 RepID=D4SS83_9XANT
Fructokinase {ECO:0000313|EMBL:KGR58679.1}; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
fructokinase
scnpilot_solids2_trim150_scaffold_2422_5
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3682..4020
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BBJ4_9MICO
Autoinducer-2 (AI-2) modifying protein LsrG {ECO:0000313|EMBL:KJL27126.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2422_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4277..4696
DNA (420bp) protein (140aa)
Putative integral membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTP7_9GAMM
putative integral membrane protein
Putative integral membrane protein {ECO:0000313|EMBL:AGG88376.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2422_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4835..5323)
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTQ0_9GAMM
acetyltransferase, N-acetylglutamate synthase
Acetyltransferase, N-acetylglutamate synthase {ECO:0000313|EMBL:AGG88379.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2422_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5364..6269)
DNA (906bp) protein (302aa)
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X2_9GAMM
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EIL94863.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
isopropylmalate/homocitrate/citramalate synthase
scnpilot_solids2_trim150_scaffold_2422_9
unknown

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comp(6297..6485)
DNA (189bp) protein (63aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2422_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6598..8586)
DNA (1989bp) protein (663aa)
acetyl/propionyl-CoA carboxylase, alpha subunit (EC:6.3.4.14 6.4.1.4)
Carbamoyl-phosphate synthase L chain ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X3_9GAMM
Carbamoyl-phosphate synthase L chain ATP-binding protein {ECO:0000313|EMBL:EIL94864.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_2422_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8675..9469)
DNA (795bp) protein (265aa)
Enoyl-CoA hydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X4_9GAMM
Enoyl-CoA hydratase {ECO:0000313|EMBL:EIL94865.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
enoyl-CoA hydratase/carnithine racemase
scnpilot_solids2_trim150_scaffold_2422_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9622..9897)
DNA (276bp) protein (92aa)
30S ribosomal protein S20 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM55_9GAMM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
Displaying 12 items

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