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scnpilot_solids2_trim150_scaffold_2525

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2525_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..238)
DNA (237bp) protein (79aa)
ChrB domain-containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG10675.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_2525_2
unknown

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comp(759..980)
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2525_3
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1150..1302)
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI00031ED284
ABC-type antimicrobial peptide transport system, ATPase component
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AGB26574.1}; Flags: Precursor;; TaxID=710686 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
scnpilot_solids2_trim150_scaffold_2525_4
unknown

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1614..1829
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2525_5
unknown

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2150..2704
DNA (555bp) protein (185aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2525_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(2691..2837)
DNA (147bp) protein (49aa)
Putative lipoprotein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TWF7_9CHLR
Putative lipoprotein {ECO:0000313|EMBL:EFH84540.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
lipoprotein
scnpilot_solids2_trim150_scaffold_2525_7
unknown

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comp(2827..3078)
DNA (252bp) protein (84aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2525_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3230..3484)
DNA (255bp) protein (85aa)
Type IV pilus assembly PilZ n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218S5_RHOPB
Pilus assembly protein PilZ {ECO:0000313|EMBL:KJC60171.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
type IV pilus assembly PilZ
scnpilot_solids2_trim150_scaffold_2525_9
unknown

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comp(3529..4128)
DNA (600bp) protein (200aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2525_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4196..4909)
DNA (714bp) protein (238aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4K1_9BRAD
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_2525_11
unknown

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comp(4906..5478)
DNA (573bp) protein (191aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2525_12

Not on your lists

comp(5524..6168)
DNA (645bp) protein (215aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4K2_9BRAD
Marine sediment metagenome DNA, contig: S03H2_S17422 {ECO:0000313|EMBL:GAH72223.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
two-component response regulator protein
scnpilot_solids2_trim150_scaffold_2525_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6664..7635)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHJ4_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42132.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_2525_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7814..8128
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PUR6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42133.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K09700 hypothetical protein
scnpilot_solids2_trim150_scaffold_2525_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8170..8703
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMW6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42134.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cytochrome B561; K12262 cytochrome b561
scnpilot_solids2_trim150_scaffold_2525_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9157..9744
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NY98_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31168.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
mmfC2; hypothetical protein
scnpilot_solids2_trim150_scaffold_2525_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9745..9963
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRI8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42140.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2525_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10094..11533)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHH3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42112.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sufI; multicopper oxidase rbh
Displaying 18 items

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