ggKbase home page

scnpilot_solids2_trim150_scaffold_2599

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2599_1

Not on your lists

453..1175
DNA (723bp) protein (241aa)
Marine sediment metagenome DNA, contig: S12H4_L01238 {ECO:0000313|EMBL:GAI85789.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Uncharacterized protein id=3528754 bin=GWF2_Bacteroidetes_49_14 species=Cecembia lonarensis genus=Cecembia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein; K07133
scnpilot_solids2_trim150_scaffold_2599_2
unknown

Not on your lists

1412..1894
DNA (483bp) protein (161aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2599_3
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(1805..2854)
DNA (1050bp) protein (350aa)
multidrug resistance protein B; K01273 membrane dipeptidase [EC:3.4.13.19] id=24390820 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19]
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
scnpilot_solids2_trim150_scaffold_2599_4
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2891..3877)
DNA (987bp) protein (329aa)
membrane dipeptidase family protein 2 (EC:3.4.13.19)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4P9A8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ90507.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
scnpilot_solids2_trim150_scaffold_2599_5
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3983..5008
DNA (1026bp) protein (342aa)
Transcriptional regulator, GntR family n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WF23_PANSA
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADU70247.1}; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
scnpilot_solids2_trim150_scaffold_2599_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5041..6534
DNA (1494bp) protein (498aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FN2_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KGD89179.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_2599_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6636..7553
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4948701 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dppB; dipeptide transport system permease DppB; K02033 peptide/nickel transport system permease protein
Tax=GWC2_Rokubacteria_70_16_curated
scnpilot_solids2_trim150_scaffold_2599_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7546..8436
DNA (891bp) protein (297aa)
ABC transporter permease; K02034 peptide/nickel transport system permease protein id=14627053 bin=bin7_NC10_sister species=Brevibacillus brevis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
gsiD; Oligopeptide ABC transporter permease protein; K02034 peptide/nickel transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
scnpilot_solids2_trim150_scaffold_2599_9
unknown

Not on your lists

8832..9383
DNA (552bp) protein (184aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2599_10
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9213..9560)
DNA (348bp) protein (116aa)
Transposase of ISMdi2, ISL3 family n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CMX9_METED
transposase of ISMdi2, ISL3 family
Transposase of ISMdi2, ISL3 family {ECO:0000313|EMBL:CAX17008.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
scnpilot_solids2_trim150_scaffold_2599_11
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

9653..10057
DNA (405bp) protein (135aa)
Integrase catalytic region n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NVL0_STRVO
integrase catalytic subunit
Tax=RBG_16_RIF_CHLX_72_14_curated
scnpilot_solids2_trim150_scaffold_2599_12
Streptomyces sp. PCS3-D2, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10029..10478)
DNA (450bp) protein (150aa)
Uncharacterized protein {ECO:0000313|EMBL:EYU65287.1}; TaxID=1460244 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PCS3-D2.;"
Displaying 12 items

View Taxonomy