ggKbase home page

scnpilot_solids2_trim150_scaffold_2786

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2786_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..552
DNA (552bp) protein (184aa)
Heavy metal RND efflux outer membrane protein,CzcC family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVH1_9PROT
Heavy metal RND efflux outer membrane protein,CzcC family {ECO:0000313|EMBL:CCU63325.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
scnpilot_solids2_trim150_scaffold_2786_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

549..2102
DNA (1554bp) protein (518aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIY1_9PROT
Hemolysin D {ECO:0000313|EMBL:KIO48668.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
scnpilot_solids2_trim150_scaffold_2786_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2118..5330
DNA (3213bp) protein (1071aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Nitrosomonas sp. AL212 RepID=F0TD03_9PROT rbh
Cation transporter {ECO:0000313|EMBL:KIO48669.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA rbh
scnpilot_solids2_trim150_scaffold_2786_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5432..7738
DNA (2307bp) protein (769aa)
cadmium-translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Metal ABC transporter ATPase {ECO:0000313|EMBL:KIO48670.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Cadmium-translocating P-type ATPase id=1341268 bin=GWE1_T_denit_62_9 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_solids2_trim150_scaffold_2786_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7807..8514
DNA (708bp) protein (236aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUS8_9PROT
Cation transporter {ECO:0000313|EMBL:KIO48671.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
scnpilot_solids2_trim150_scaffold_2786_6
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8496..9035)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B940A
DDE superendonuclease family protein {ECO:0000313|EMBL:AJZ56939.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
transposase
scnpilot_solids2_trim150_scaffold_2786_7
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(9053..9613)
DNA (561bp) protein (187aa)
resolvase n=1 Tax=Methylosarcina fibrata RepID=UPI00036197B2 rbh
resolvase rbh
Resolvase domain {ECO:0000313|EMBL:ACF43334.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
scnpilot_solids2_trim150_scaffold_2786_8
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9745..10629
DNA (885bp) protein (295aa)
Transposase for transposon Tn4556 n=1 Tax=Glaciecola polaris LMG 21857 RepID=K6ZPW9_9ALTE
Transposase for transposon Tn4556 {ECO:0000313|EMBL:GAC32312.1}; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola polaris LMG 21857.;"
tnpA; Transposase for ISThsp9 transposon of the Tn3 family
scnpilot_solids2_trim150_scaffold_2786_9
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10626..12146
DNA (1521bp) protein (507aa)
Transposase for transposon Tn4556 n=1 Tax=Glaciecola polaris LMG 21857 RepID=K6ZPW9_9ALTE
Transposase, TnpA family {ECO:0000313|EMBL:EXI90283.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
tnpA; Transposase for ISThsp9 transposon of the Tn3 family
scnpilot_solids2_trim150_scaffold_2786_10
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12226..12696
DNA (471bp) protein (157aa)
Transposase n=5 Tax=Pseudomonas RepID=R9VEL0_PSEPU
transposase
Uncharacterized protein {ECO:0000313|EMBL:ENY79253.1}; TaxID=1227924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida TRO1.;"
scnpilot_solids2_trim150_scaffold_2786_11
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12693..12986)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QX12_RALPI
Mobile element protein {ECO:0000313|EMBL:CDS54757.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
transposase
scnpilot_solids2_trim150_scaffold_2786_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13248..13793)
DNA (546bp) protein (182aa)
ISAfe3, transposase n=1 Tax=Thauera sp. 28 RepID=N6ZJL2_9RHOO
Transposase {ECO:0000313|EMBL:KJA11391.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
ISAfe3, transposase
scnpilot_solids2_trim150_scaffold_2786_13
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13793..14467)
DNA (675bp) protein (225aa)
ISAfe3, transposase n=1 Tax=Thauera sp. 28 RepID=N6ZJL2_9RHOO rbh
tnp32; transposase rbh
Transposase {ECO:0000313|EMBL:CAI08075.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_2786_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14749..15078
DNA (330bp) protein (110aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUS8_9PROT
Cation transporter {ECO:0000313|EMBL:KIO48671.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
scnpilot_solids2_trim150_scaffold_2786_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15097..15543)
DNA (447bp) protein (149aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48666.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
scnpilot_solids2_trim150_scaffold_2786_16
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15795..16430)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000319906E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
scnpilot_solids2_trim150_scaffold_2786_17
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16511..16936
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FD488B
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
scnpilot_solids2_trim150_scaffold_2786_18
unknown

Not on your lists

comp(16918..17097)
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2786_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17043..18257)
DNA (1215bp) protein (405aa)
Chromate transport protein ChrA n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SIB9_HAHCH rbh
Chromate transporter {ECO:0000313|EMBL:KFL29460.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
chromate transporter; K07240 chromate transporter rbh
scnpilot_solids2_trim150_scaffold_2786_20
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18581..18859)
DNA (279bp) protein (93aa)
Mercuric transport protein periplasmic component (Periplasmic mercury ion-binding protein) (Mercury scavenger protein) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVR9_THIA3
merP; Mercuric transport protein periplasmic component precursor (Periplasmic mercury ion-binding protein) (Mercury scavenger protein)
Periplasmic mercury ion-binding protein {ECO:0000256|RuleBase:RU361212}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
scnpilot_solids2_trim150_scaffold_2786_21
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18872..19219)
DNA (348bp) protein (116aa)
Mercuric transport protein (Mercury ion transport protein) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVR8_THIA3
Mercury transporter MerT {ECO:0000313|EMBL:KGH30749.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
merT; Mercuric transport protein (Mercury ion transport protein)
scnpilot_solids2_trim150_scaffold_2786_22
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19297..19695
DNA (399bp) protein (133aa)
Transcriptional regulator, MerR family n=39 Tax=Pseudomonas RepID=A4VQ08_PSEU5
MerR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
scnpilot_solids2_trim150_scaffold_2786_23
unknown

Not on your lists

19987..20217
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2786_24
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20496..20897
DNA (402bp) protein (134aa)
ISRm2011-2 transposase protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ADC3_NITEC
ISRm2011-2 transposase protein
ISRm2011-2 transposase protein {ECO:0000313|EMBL:ABI60659.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
scnpilot_solids2_trim150_scaffold_2786_25
unknown

Not on your lists

comp(20890..21225)
DNA (336bp) protein (112aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2786_26
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21859..22590)
DNA (732bp) protein (244aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0B8N0_9XANT
Uncharacterized protein {ECO:0000313|EMBL:EGD11220.1}; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2786_27
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22810..24708)
DNA (1899bp) protein (633aa)
ParB-like nuclease n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y667_NITMU
ParB-like nuclease; K03497 chromosome partitioning protein, ParB family
ParB-like nuclease {ECO:0000313|EMBL:ABB75754.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 27 items

View Taxonomy