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scnpilot_solids2_trim150_scaffold_2980

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2980_1
Heterosigma akashiwo, Heterosigma, Chattonellales, Raphidophyceae, Eukaryota

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3..584
DNA (582bp) protein (194aa)
NADH-ubiquinone oxidoreductase chain 4 {ECO:0000256|RuleBase:RU003297}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003297};; TaxID=2829 species="Eukaryota; Stramenopiles; Raphidophyceae; Chattonellales; Chattonellaceae; Heterosigma.;" source="Heterosigma akashiwo (Chromophytic alga) (Heterosigma carterae).;"
NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Heterosigma akashiwo RepID=D2Z246_9STRA
nad4; NADH dehydrogenase subunit 4
scnpilot_solids2_trim150_scaffold_2980_2
unknown

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588..1115
DNA (528bp) protein (176aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2980_3
Nannochloropsis oculata, Nannochloropsis, Eustigmatales, Eustigmatophyceae, Eukaryota

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1119..3107
DNA (1989bp) protein (663aa)
NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061106}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003404};; TaxID=43925 species="Eukaryota; Stramenopiles; Eustigmatophyceae; Eustigmatales; Monodopsidaceae; Nannochloropsis.;" source="Nannochloropsis oculata.;"
NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Nannochloropsis oculata RepID=T1R7I8_9STRA rbh
nad5; NADH dehydrogenase subunit 5 rbh
scnpilot_solids2_trim150_scaffold_2980_trna_1
unknown

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3123..3195
DNA (73bp)
transferRNA Lys
scnpilot_solids2_trim150_scaffold_2980_4
Vermamoeba vermiformis, Vermamoeba, Eukaryota

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3220..3594
DNA (375bp) protein (125aa)
Ribosomal protein S8 n=1 Tax=Vermamoeba vermiformis RepID=D4PBJ7_VERVE
Ribosomal protein S8 {ECO:0000313|EMBL:ADD62209.1}; TaxID=5778 species="Eukaryota; Amoebozoa; Tubulinea; Euamoebida; Tubulinida; Hartmannellidae; Vermamoeba.;" source="Vermamoeba vermiformis (Amoeba) (Hartmannella vermiformis).;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
scnpilot_solids2_trim150_scaffold_2980_5
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

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3601..4125
DNA (525bp) protein (175aa)
50S ribosomal protein L6 id=4167465 bin=GWF2_Lentisphaerae_38_69 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
rplF; 50S ribosomal protein L6
Tax=GWF2_Lentisphaerae_38_69_curated
scnpilot_solids2_trim150_scaffold_2980_6
unknown

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4128..4664
DNA (537bp) protein (179aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2980_7
Helicosporidium sp. ex Simulium jonesi, Helicosporidium, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

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4664..5392
DNA (729bp) protein (243aa)
Small subunit ribosomal protein 4 n=1 Tax=Plasmodium yoelii RepID=H7CDQ9_9APIC
Ribosomal protein S4 {ECO:0000313|EMBL:ACT36188.1}; TaxID=145475 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Helicosporidium.;" source="Helicosporidium sp. subsp. Simulium jonesii (Green alga).;"
scnpilot_solids2_trim150_scaffold_2980_trna_2
unknown

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5413..5483
DNA (71bp)
transferRNA Gly
scnpilot_solids2_trim150_scaffold_2980_trna_3
unknown

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5542..5614
DNA (73bp)
transferRNA Ala
scnpilot_solids2_trim150_scaffold_2980_trna_4
unknown

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5637..5707
DNA (71bp)
transferRNA Trp
scnpilot_solids2_trim150_scaffold_2980_trna_5
unknown

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5736..5815
DNA (80bp)
transferRNA Leu
scnpilot_solids2_trim150_scaffold_2980_trna_6
unknown

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5817..5890
DNA (74bp)
transferRNA His
scnpilot_solids2_trim150_scaffold_2980_trna_7
unknown

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5921..6006
DNA (86bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_2980_trna_8
unknown

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6025..6098
DNA (74bp)
transferRNA Met
scnpilot_solids2_trim150_scaffold_2980_trna_9
unknown

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6106..6177
DNA (72bp)
transferRNA Pro
scnpilot_solids2_trim150_scaffold_2980_8
Nannochloropsis granulata, Nannochloropsis, Eustigmatales, Eustigmatophyceae, Eukaryota

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6195..6578
DNA (384bp) protein (128aa)
50S ribosomal protein L14 n=1 Tax=Nannochloropsis granulata RepID=T1R7F7_9STRA
50S ribosomal protein L14 {ECO:0000313|EMBL:AGI48911.1}; TaxID=43926 species="Eukaryota; Stramenopiles; Eustigmatophyceae; Eustigmatales; Monodopsidaceae; Nannochloropsis.;" source="Nannochloropsis granulata.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
scnpilot_solids2_trim150_scaffold_2980_9
Chrysodidymus synuroideus, Chrysodidymus, Synurales, Synurophyceae, Eukaryota

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6585..6965
DNA (381bp) protein (127aa)
Ribosomal protein S12 n=1 Tax=Chrysodidymus synuroideus RepID=Q9MG89_9STRA
Ribosomal protein S12 {ECO:0000313|EMBL:AAF36960.1}; TaxID=47573 species="Eukaryota; Stramenopiles; Synurophyceae; Synurales; Synuraceae; Chrysodidymus.;" source="Chrysodidymus synuroideus.;"
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
scnpilot_solids2_trim150_scaffold_2980_10
Jakoba bahamiensis, Jakoba, Eukaryota

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6907..7383
DNA (477bp) protein (159aa)
Ribosomal protein S7 n=1 Tax=Jakoba bahamiensis RepID=M4Q9Q0_9EUKA
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
Ribosomal protein S7 {ECO:0000313|EMBL:AGH24147.1}; TaxID=221721 species="Eukaryota; Jakobida; Jakobidae; Jakoba.;" source="Jakoba bahamiensis.;"
scnpilot_solids2_trim150_scaffold_2980_trna_10
unknown

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7521..7593
DNA (73bp)
transferRNA Ile
scnpilot_solids2_trim150_scaffold_2980_11
Chattonella marina, Chattonella, Chattonellales, Raphidophyceae, Eukaryota

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7656..8051
DNA (396bp) protein (132aa)
Cytochrome c oxidase subunit 3 n=1 Tax=Chattonella marina RepID=D2Z1Z9_9STRA
Cytochrome c oxidase subunit 3 {ECO:0000256|RuleBase:RU003375}; TaxID=90936 species="Eukaryota; Stramenopiles; Raphidophyceae; Chattonellales; Chattonellaceae; Chattonella.;" source="Chattonella marina.;"
cox3; Cox3; K02262 cytochrome c oxidase subunit 3
Displaying 21 items

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