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scnpilot_solids2_trim150_scaffold_1102

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1102_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..526
DNA (525bp) protein (175aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQM3_9GAMM
scnpilot_solids2_trim150_scaffold_1102_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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652..948
DNA (297bp) protein (99aa)
Acetyltransferase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5N7_9GAMM
Acetyltransferase-like protein {ECO:0000313|EMBL:EIL94778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative acetyltransferase
scnpilot_solids2_trim150_scaffold_1102_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1112..1504
DNA (393bp) protein (131aa)
Ribosomal silencing factor RsfS n=1 Tax=Rhodanobacter denitrificans RepID=I4WTH1_9GAMM
iojap-like ribosome-associated protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1102_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1568..2032
DNA (465bp) protein (155aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Rhodanobacter denitrificans RepID=M4NED8_9GAMM
rRNA large subunit m3Psi methyltransferase RlmH
scnpilot_solids2_trim150_scaffold_1102_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2105..2551
DNA (447bp) protein (149aa)
Acetyltransferase, GNaT family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P4_9GAMM
acetyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1102_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2548..3165
DNA (618bp) protein (206aa)
Maf-like protein UUA_03793 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ88_9GAMM
Maf-like protein UUA_03793 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
MAF protein
scnpilot_solids2_trim150_scaffold_1102_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3140..3877)
DNA (738bp) protein (246aa)
Putative metal-dependent membrane protease n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT1_9GAMM
Putative metal-dependent membrane protease {ECO:0000313|EMBL:EIL89222.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative metal-dependent membrane protease
scnpilot_solids2_trim150_scaffold_1102_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3987..4379)
DNA (393bp) protein (131aa)
Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) n=1 Tax=Rhodanobacter denitrificans RepID=I4WTH7_9GAMM
MAPEG family
MAPEG family {ECO:0000313|EMBL:AGG88306.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1102_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4495..5352
DNA (858bp) protein (286aa)
Zinc metallopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJE4_9GAMM
Zinc metallopeptidase {ECO:0000313|EMBL:EIL87335.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative metalloprotease
scnpilot_solids2_trim150_scaffold_1102_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5492..7399)
DNA (1908bp) protein (636aa)
DNA/RNA helicase, superfamily II (EC:5.99.1.-)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent RNA helicase DeaD n=1 Tax=Rhodanobacter denitrificans RepID=M4NKK8_9GAMM
scnpilot_solids2_trim150_scaffold_1102_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7537..8379
DNA (843bp) protein (281aa)
Esterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI3_9GAMM
S-formylglutathione hydrolase
S-formylglutathione hydrolase {ECO:0000313|EMBL:AGG88312.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1102_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8458..9780)
DNA (1323bp) protein (441aa)
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI4_9GAMM
DNA/RNA helicase, superfamily II
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGG88313.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1102_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10003..10686)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJF3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87344.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
scnpilot_solids2_trim150_scaffold_1102_14
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10820..12070
DNA (1251bp) protein (417aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCB4_9GAMM
Sugar transporter {ECO:0000313|EMBL:KJV27788.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_1102_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12116..12601
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ99_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids2_trim150_scaffold_1102_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12649..13224)
DNA (576bp) protein (192aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA0_9GAMM
Cell wall-associated hydrolase {ECO:0000313|EMBL:EIM01642.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell wall-associated hydrolase, invasion-associated protein
scnpilot_solids2_trim150_scaffold_1102_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13364..14716)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKW6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM00108.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1102_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14885..15676
DNA (792bp) protein (264aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA5_9GAMM
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EIL88696.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
N-formylglutamate amidohydrolase
scnpilot_solids2_trim150_scaffold_1102_19
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15697..16350)
DNA (654bp) protein (218aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Beta carbonic anhydrase n=1 Tax=Pandoraea sp. RB-44 RepID=V5UEE6_9BURK rbh
scnpilot_solids2_trim150_scaffold_1102_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16556..16870)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88691.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1102_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16867..17718)
DNA (852bp) protein (284aa)
Maltose operon periplasmic protein (MalM) n=1 Tax=Rhodanobacter denitrificans RepID=I4WTJ9_9GAMM
Maltose operon periplasmic protein precursor (MalM)
Maltose operon periplasmic protein (MalM) {ECO:0000313|EMBL:AGG88328.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1102_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17733..19148)
DNA (1416bp) protein (472aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W524_9GAMM
scnpilot_solids2_trim150_scaffold_1102_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19277..19603
DNA (327bp) protein (109aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W523_9GAMM
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EIL94564.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Iron-sulfur cluster assembly accessory protein
Displaying 23 items

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