ggKbase home page

scnpilot_solids2_trim150_scaffold_1140

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1140_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..888
DNA (888bp) protein (296aa)
Fe-S oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJD0_9GAMM
Fe-S oxidoreductase
Fe-S oxidoreductase {ECO:0000313|EMBL:AGG87906.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

969..1550
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99570.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF3501)
scnpilot_solids2_trim150_scaffold_1140_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1553..2152
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF1_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87904.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2163..2681)
DNA (519bp) protein (173aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Adenine phosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF2_9GAMM
scnpilot_solids2_trim150_scaffold_1140_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2714..2986)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87902.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3092..4867
DNA (1776bp) protein (592aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18) rbh
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC5_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1140_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4897..5457
DNA (561bp) protein (187aa)
Cytosine/adenosine deaminase n=1 Tax=Rhodanobacter denitrificans RepID=M4NB93_9GAMM
cytosine/adenosine deaminase
Cytosine/adenosine deaminase {ECO:0000313|EMBL:AGG87900.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5454..6176
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87899.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6468..6959
DNA (492bp) protein (164aa)
Type IV pilus assembly protein PilE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB94_9GAMM
Type IV pilus assembly protein PilE {ECO:0000313|EMBL:EIL96735.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_1140_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6963..7427
DNA (465bp) protein (155aa)
Putative type 4 fimbrial pilin related transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB93_9GAMM
Putative type 4 fimbrial pilin related transmembrane protein {ECO:0000313|EMBL:EIL96734.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_1140_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7424..7984
DNA (561bp) protein (187aa)
Type IV pilus assembly protein PilV n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB92_9GAMM rbh
Type IV pilus assembly protein PilV {ECO:0000313|EMBL:EIL96733.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
type IV pilus modification protein PilV
scnpilot_solids2_trim150_scaffold_1140_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7981..9096
DNA (1116bp) protein (372aa)
Type IV fimbrial biogenesis pilW-related transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB91_9GAMM rbh
Type IV fimbrial biogenesis pilW-related transmembrane protein {ECO:0000313|EMBL:EIL96732.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_1140_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9096..9650
DNA (555bp) protein (185aa)
Pilin biogenesis transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB90_9GAMM rbh
Pilin biogenesis transmembrane protein {ECO:0000313|EMBL:EIL96731.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1140_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9681..12992
DNA (3312bp) protein (1104aa)
Type 4 fimbrial biogenesis protein pily1-related protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZG2_9GAMM rbh
Tfp pilus assembly protein, tip-associated adhesin PilY1 {ECO:0000313|EMBL:AGG87893.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1 rbh
scnpilot_solids2_trim150_scaffold_1140_trna_1
unknown

Not on your lists

comp(13192..13264)
DNA (73bp)
transferRNA Lys
scnpilot_solids2_trim150_scaffold_1140_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13337..14023)
DNA (687bp) protein (229aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
7-cyano-7-deazaguanine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJB2_9GAMM
queuosine biosynthesis protein QueC
scnpilot_solids2_trim150_scaffold_1140_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14139..14831)
DNA (693bp) protein (231aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU5_9GAMM rbh
organic radical activating enzyme
scnpilot_solids2_trim150_scaffold_1140_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14844..15707)
DNA (864bp) protein (288aa)
Tol-pal system protein YbgF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU4_9GAMM rbh
Tol-pal system protein YbgF {ECO:0000313|EMBL:EIL98685.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tol-pal system protein YbgF
scnpilot_solids2_trim150_scaffold_1140_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15707..16213)
DNA (507bp) protein (169aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZG7_9GAMM
peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:AGG87888.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16462..17796)
DNA (1335bp) protein (445aa)
Protein TolB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU2_9GAMM rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tol-pal system beta propeller repeat protein TolB
scnpilot_solids2_trim150_scaffold_1140_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17793..18737)
DNA (945bp) protein (315aa)
F0F1-type ATP synthase, beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NJA7_9GAMM rbh
F0F1-type ATP synthase, beta subunit rbh
F0F1-type ATP synthase, beta subunit {ECO:0000313|EMBL:AGG87886.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1140_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18724..19137)
DNA (414bp) protein (138aa)
TolR protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU0_9GAMM
TolR protein {ECO:0000313|EMBL:EIL98681.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Cell division and transport-associated protein TolR
Displaying 22 items

View Taxonomy