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scnpilot_solids2_trim150_scaffold_1142

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1142_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..502
DNA (501bp) protein (167aa)
RNA polymerase sigma factor RpoH n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU0_9GAMM
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
alternative sigma factor RpoH
scnpilot_solids2_trim150_scaffold_1142_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(598..1971)
DNA (1374bp) protein (458aa)
C-terminal processing peptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZT9_9GAMM rbh
C-terminal processing peptidase {ECO:0000313|EMBL:EIL92730.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
C-terminal processing peptidase
scnpilot_solids2_trim150_scaffold_1142_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2103..3398)
DNA (1296bp) protein (432aa)
Membrane-bound metallopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZT8_9GAMM rbh
Membrane-bound metallopeptidase {ECO:0000313|EMBL:EIL92729.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
membrane-bound metallopeptidase
scnpilot_solids2_trim150_scaffold_1142_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3412..4188
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZT7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92728.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1142_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4296..5984
DNA (1689bp) protein (563aa)
DNA ligase B {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019096}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019091};; Polydeoxyribonucleotide synthase [NAD(+)] B {ECO:0000256|HAMAP-Rule:MF_01587}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA ligase B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZT6_9GAMM rbh
NAD-dependent DNA ligase
scnpilot_solids2_trim150_scaffold_1142_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5988..6389)
DNA (402bp) protein (134aa)
UPF0225 protein UU7_15735 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS6_9GAMM
UPF0225 protein UU7_15735 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1142_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6584..7177)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90616.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative S-adenosylmethionine-dependent methyltransferase
scnpilot_solids2_trim150_scaffold_1142_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7190..7387)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90615.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1142_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7470..8024)
DNA (555bp) protein (185aa)
Histidine utilization protein HutD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS3_9GAMM rbh
Histidine utilization protein HutD {ECO:0000313|EMBL:EIL90614.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1142_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8021..10138)
DNA (2118bp) protein (706aa)
ATP-dependent DNA helicase DinG n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS2_9GAMM rbh
ATP-dependent DNA helicase DinG {ECO:0000313|EMBL:EIL90613.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA helicase, Rad3 rbh
scnpilot_solids2_trim150_scaffold_1142_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10356..13307
DNA (2952bp) protein (984aa)
Gaf domain/ggdef domain/eal domain protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS1_9GAMM rbh
Gaf domain/ggdef domain/eal domain protein {ECO:0000313|EMBL:EIL90612.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_1142_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13317..13970)
DNA (654bp) protein (218aa)
DSBA oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS0_9GAMM rbh
DSBA oxidoreductase {ECO:0000313|EMBL:EIL90611.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative dithiol-disulfide isomerase involved in polyketide biosynthesis
scnpilot_solids2_trim150_scaffold_1142_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14049..15692)
DNA (1644bp) protein (548aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR9_9GAMM rbh
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:EIL90610.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
FAD-dependent dehydrogenase
scnpilot_solids2_trim150_scaffold_1142_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15780..16286)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90609.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1142_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16283..17650)
DNA (1368bp) protein (456aa)
Drug:H+ antiporter-1 family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR7_9GAMM rbh
Drug:H+ antiporter-1 family protein {ECO:0000313|EMBL:EIL90608.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_1142_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17793..19118
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90607.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidase family M49
Displaying 16 items

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