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scnpilot_solids2_trim150_scaffold_1153

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1153_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..358)
DNA (357bp) protein (119aa)
LysM domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGM9_9GAMM
LysM domain-containing protein {ECO:0000313|EMBL:EIL98620.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
LysM domain-containing protein
scnpilot_solids2_trim150_scaffold_1153_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

549..1058
DNA (510bp) protein (170aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN0_9GAMM
scnpilot_solids2_trim150_scaffold_1153_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1055..1996
DNA (942bp) protein (314aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Methionyl-tRNA formyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN1_9GAMM
methionyl-tRNA formyltransferase
scnpilot_solids2_trim150_scaffold_1153_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1993..3294
DNA (1302bp) protein (434aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
16S rRNA m(5)C-967 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Rhodanobacter sp. 115 RepID=I4VX49_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1153_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3311..4228)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBT8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL96929.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1153_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4363..6084
DNA (1722bp) protein (574aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NTE0_9GAMM rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG90756.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1153_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6291..7487
DNA (1197bp) protein (399aa)
Putative cell surface polysaccharide polymerase/ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN4_9GAMM rbh
Putative cell surface polysaccharide polymerase/ligase {ECO:0000313|EMBL:EIL98625.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lipid A core-O-antigen ligase-like enyme
scnpilot_solids2_trim150_scaffold_1153_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7494..8495
DNA (1002bp) protein (334aa)
Glycosyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN5_9GAMM rbh
Glycosyltransferase {ECO:0000313|EMBL:EIL98626.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyltransferase rbh
scnpilot_solids2_trim150_scaffold_1153_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8483..9322)
DNA (840bp) protein (280aa)
Two-domain glycosyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN6_9GAMM rbh
Two-domain glycosyltransferase {ECO:0000313|EMBL:EIL98627.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyl transferase
scnpilot_solids2_trim150_scaffold_1153_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9333..10271)
DNA (939bp) protein (313aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN7_9GAMM rbh
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL98628.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyl transferase
scnpilot_solids2_trim150_scaffold_1153_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10268..11218)
DNA (951bp) protein (317aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN8_9GAMM
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIL98629.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleoside-diphosphate-sugar epimerase
scnpilot_solids2_trim150_scaffold_1153_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11390..12205
DNA (816bp) protein (272aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN9_9GAMM rbh
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL98630.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyl transferase
scnpilot_solids2_trim150_scaffold_1153_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12377..13408
DNA (1032bp) protein (344aa)
Glycosyl/glycerophosphate transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK47_9GAMM
Glycosyl/glycerophosphate transferase {ECO:0000313|EMBL:EIL92017.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glycosyl/glycerophosphate transferase, teichoic acid biosynthesis
scnpilot_solids2_trim150_scaffold_1153_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13481..15223
DNA (1743bp) protein (581aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGP1_9GAMM rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:EIL98632.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
scnpilot_solids2_trim150_scaffold_1153_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15220..15540
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WK45_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90765.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1153_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15599..16309)
DNA (711bp) protein (237aa)
XRE family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000349BE27
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EIL92614.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids2_trim150_scaffold_1153_17
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16578..16766)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002E4D055
Uncharacterized protein {ECO:0000313|EMBL:EEQ94196.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1153_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16980..17471)
DNA (492bp) protein (164aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK43_9GAMM rbh
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase rbh
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:AGG90767.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1153_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17468..17902)
DNA (435bp) protein (145aa)
Dihydroneopterin aldolase n=2 Tax=Rhodanobacter denitrificans RepID=M4NM84_9GAMM
dihydroneopterin aldolase
Dihydroneopterin aldolase {ECO:0000313|EMBL:AGG90768.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1153_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17917..18942
DNA (1026bp) protein (342aa)
DNA/RNA helicase, superfamily II n=1 Tax=Rhodanobacter denitrificans RepID=M4NIN8_9GAMM
DNA/RNA helicase, superfamily II
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGG90769.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 20 items

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