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scnpilot_solids2_trim150_scaffold_1200

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1200_1
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(431..2107)
DNA (1677bp) protein (559aa)
adenine-specific DNA-methyltransferase; K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YXF6_DESAF rbh
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:EGJ51733.1}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
scnpilot_solids2_trim150_scaffold_1200_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2301..3116)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKJ3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99984.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1200_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3147..4622)
DNA (1476bp) protein (492aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
Amidophosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLM0_9GAMM
scnpilot_solids2_trim150_scaffold_1200_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4677..5315)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6E9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95040.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative membrane protein, required for colicin V production
scnpilot_solids2_trim150_scaffold_1200_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5358..6374)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NLF5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88566.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1200_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6415..7734)
DNA (1320bp) protein (440aa)
Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6E7_9GAMM
Bifunctional folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:EIL95038.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
folylpolyglutamate synthase/dihydrofolate synthase
scnpilot_solids2_trim150_scaffold_1200_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8290..8724
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034831A0
Uncharacterized protein {ECO:0000313|EMBL:EIL91957.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1200_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8747..9682
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003459D21
VirB8 protein {ECO:0000313|EMBL:EIL91958.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
VirB8 protein; K03203 type IV secretion system protein VirB8
scnpilot_solids2_trim150_scaffold_1200_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9679..10446
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344F3C5
Type IV secretion system protein Virb9 {ECO:0000313|EMBL:EIL91959.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB9; Type IV secretory pathway, VirB9 component
scnpilot_solids2_trim150_scaffold_1200_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10443..11636
DNA (1194bp) protein (398aa)
VirB10 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL9_9GAMM
VirB10 protein {ECO:0000313|EMBL:EIL91960.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB10; type IV secretion system channel component VirB4; K03195 type IV secretion system protein VirB10
scnpilot_solids2_trim150_scaffold_1200_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11658..12749
DNA (1092bp) protein (364aa)
VirB11 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM0_9GAMM
Type IV secretion system energizing component VirB11 {ECO:0000313|EMBL:KJV26028.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative type IV secretion system conjugal transfer protein; K03196 type IV secretion system protein VirB11
scnpilot_solids2_trim150_scaffold_1200_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12728..13609
DNA (882bp) protein (294aa)
Putative type IV secretion system conjugal protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM1_9GAMM
Putative type IV secretion system conjugal protein {ECO:0000313|EMBL:EIL91962.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
VirB1 protein; K03194 type IV secretion system protein VirB1
scnpilot_solids2_trim150_scaffold_1200_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13742..14149
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034780F2
Putative type IV secretion system protein {ECO:0000313|EMBL:EIL91963.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system protein; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_1200_14
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

14184..14450
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346EAD1
Uncharacterized protein {ECO:0000313|EMBL:KIJ72227.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB3); K03198 type IV secretion system protein VirB3
scnpilot_solids2_trim150_scaffold_1200_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14499..16994
DNA (2496bp) protein (832aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344928B
Type IV secretion/conjugal transfer ATPase {ECO:0000313|EMBL:EIL91965.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB4; ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4); K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_1200_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17007..17783
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91966.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_1200_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17841..18431
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346F8DE
VirB6 protein {ECO:0000313|EMBL:EIL91967.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
VirB6 protein; K03201 type IV secretion system protein VirB6
Displaying 17 items

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