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scnpilot_solids2_trim150_scaffold_1277

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1277_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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27..293
DNA (267bp) protein (89aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI76_9GAMM
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EIL99167.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
oligoketide cyclase/lipid transport protein
scnpilot_solids2_trim150_scaffold_1277_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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286..567
DNA (282bp) protein (94aa)
Protein RnfH n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN7_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1277_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(584..1051)
DNA (468bp) protein (156aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH5_9GAMM
small protein A (tmRNA-binding)
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1277_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1126..1548
DNA (423bp) protein (141aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH6_9GAMM
Fe2+/Zn2+ uptake regulation protein
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:AGG88956.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1277_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1686..3359)
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1277_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3561..4622
DNA (1062bp) protein (354aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTX2_9GAMM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
heat-inducible transcription repressor HrcA
scnpilot_solids2_trim150_scaffold_1277_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4700..5236
DNA (537bp) protein (179aa)
Protein GrpE n=1 Tax=Rhodanobacter denitrificans RepID=M4NMN3_9GAMM
molecular chaperone GrpE (heat shock protein)
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1277_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5367..7289
DNA (1923bp) protein (641aa)
molecular chaperone DnaK n=1 Tax=Dyella japonica RepID=UPI00030D83E6 rbh
chaperone protein DnaK rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1277_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7422..8543
DNA (1122bp) protein (374aa)
Chaperone protein DnaJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI87_9GAMM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chaperone protein DnaJ
scnpilot_solids2_trim150_scaffold_1277_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8568..9413
DNA (846bp) protein (282aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTX6_9GAMM
scnpilot_solids2_trim150_scaffold_1277_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9410..10315
DNA (906bp) protein (302aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
pyridoxal kinase; K00868 pyridoxine kinase [EC:2.7.1.35] rbh
Pyridoxal kinase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L1W4_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1277_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10340..11035)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFU7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88947.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1277_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11249..12385
DNA (1137bp) protein (379aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Rhodanobacter denitrificans RepID=M4NMM7_9GAMM
carbamoyl-phosphate synthase small subunit
scnpilot_solids2_trim150_scaffold_1277_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12378..15605
DNA (3228bp) protein (1076aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI8_9GAMM
carbamoyl-phosphate synthase, large subunit
scnpilot_solids2_trim150_scaffold_1277_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15602..16078
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI9_9GAMM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1277_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16422..17111
DNA (690bp) protein (230aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Cytidylate kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSL1_9GAMM
cytidylate kinase
scnpilot_solids2_trim150_scaffold_1277_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17166..17552
DNA (387bp) protein (129aa)
30S ribosomal protein S1 n=1 Tax=Dyella ginsengisoli RepID=UPI000344FA78
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
Displaying 17 items

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