ggKbase home page

scnpilot_solids2_trim150_scaffold_1301

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1301_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..95)
DNA (93bp) protein (31aa)
30S ribosomal protein S16 n=1 Tax=Dyella ginsengisoli RepID=UPI000349FEBC
SSU ribosomal protein S16P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1301_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(273..1655)
DNA (1383bp) protein (461aa)
Signal recognition particle protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQB8_9GAMM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
signal recognition particle protein
scnpilot_solids2_trim150_scaffold_1301_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1794..2591
DNA (798bp) protein (266aa)
ABC transporter permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYI8_9GAMM
ABC transporter permease {ECO:0000313|EMBL:EIL92279.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type uncharacterized transport system, permease component
scnpilot_solids2_trim150_scaffold_1301_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2633..4012)
DNA (1380bp) protein (460aa)
DNA repair protein radA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYJ1_9GAMM
DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_1301_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4195..4638
DNA (444bp) protein (148aa)
Thioredoxin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUA1_9GAMM
Thioredoxin {ECO:0000313|EMBL:EIM03043.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thioredoxin
scnpilot_solids2_trim150_scaffold_1301_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4717..5703)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY40_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG89784.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1301_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5700..6896)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU95_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03037.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR03440 family protein
scnpilot_solids2_trim150_scaffold_1301_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7210..7398)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3T6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94127.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1301_9
unknown

Not on your lists

comp(7395..7676)
DNA (282bp) protein (94aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1301_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7738..9924)
DNA (2187bp) protein (729aa)
Ribosomal RNA large subunit methyltransferase K/L n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU92_9GAMM
Ribosomal RNA large subunit methyltransferase K/L {ECO:0000256|HAMAP-Rule:MF_01858, ECO:0000256|SAAS:SAAS00183812}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative N6-adenine-specific DNA methylase
scnpilot_solids2_trim150_scaffold_1301_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9921..10460)
DNA (540bp) protein (180aa)
Putative hydrolase of the alpha/beta superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3T8_9GAMM
Putative hydrolase of the alpha/beta superfamily protein {ECO:0000313|EMBL:EIL94129.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
alpha/beta hydrolase superfamily enzyme, predicted hydrolase
scnpilot_solids2_trim150_scaffold_1301_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10537..11106
DNA (570bp) protein (190aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3T9_9GAMM
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD {ECO:0000313|EMBL:EIL94130.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
negative regulator of beta-lactamase expression
scnpilot_solids2_trim150_scaffold_1301_13
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11210..12781)
DNA (1572bp) protein (524aa)
BNR/Asp-box repeat-containing protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YRG5_9BURK rbh
BNR/Asp-box repeat-containing protein rbh
BNR/Asp-box repeat-containing protein {ECO:0000313|EMBL:ADX58355.1}; Flags: Precursor;; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
scnpilot_solids2_trim150_scaffold_1301_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12968..13834
DNA (867bp) protein (289aa)
Acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFS9_9GAMM
acyl-CoA thioesterase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1301_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13875..14267
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZT4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1301_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14319..15053
DNA (735bp) protein (245aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
arginyl-tRNA--protein transferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034DA236
putative arginyl-tRNA:protein arginylyltransferase
scnpilot_solids2_trim150_scaffold_1301_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15120..16028)
DNA (909bp) protein (303aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJI7_9GAMM
Cell wall-associated hydrolase {ECO:0000313|EMBL:EIL87378.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cell wall-associated hydrolase, invasion-associated protein
scnpilot_solids2_trim150_scaffold_1301_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16237..16980)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM30_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00522.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pyridoxal phosphate enzyme, YggS family
scnpilot_solids2_trim150_scaffold_1301_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16980..18437)
DNA (1458bp) protein (486aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K1_9GAMM
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EIL94742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
scnpilot_solids2_trim150_scaffold_1301_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18529..19002
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5J9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1301_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19024..19953)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5J7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94738.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1301_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19953..22262)
DNA (2310bp) protein (770aa)
Aminopeptidase N n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1301_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22319..24052)
DNA (1734bp) protein (578aa)
Sulfite reductase, alpha subunit (Flavoprotein) n=1 Tax=Rhodanobacter denitrificans RepID=M4NF77_9GAMM
sulfite reductase, alpha subunit (flavoprotein)
Sulfite reductase, alpha subunit (Flavoprotein) {ECO:0000313|EMBL:AGG88258.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1301_24
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24301..24594
DNA (294bp) protein (98aa)
Xaa-Pro aminopeptidase family enzyme n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UEG5_9RHOB
Xaa-Pro aminopeptidase family enzyme {ECO:0000313|EMBL:EAP91646.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
Displaying 24 items

View Taxonomy