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scnpilot_solids2_trim150_scaffold_1358

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1358_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..349
DNA (348bp) protein (116aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z9_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL95240.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
short chain dehydrogenase
scnpilot_solids2_trim150_scaffold_1358_2
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

390..1139
DNA (750bp) protein (250aa)
ubiG; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:CCH87731.1}; EC=2.1.1.64 {ECO:0000313|EMBL:CCH87731.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EWG8_MODMB
scnpilot_solids2_trim150_scaffold_1358_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1182..1847)
DNA (666bp) protein (222aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NPM8_9GAMM
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGG89601.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1358_4
unknown

Not on your lists

comp(1904..3316)
DNA (1413bp) protein (471aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1358_5
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3355..4413)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5DZI4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESS72706.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1358_6
unknown

Not on your lists

comp(4483..4815)
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1358_7
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5288..6355
DNA (1068bp) protein (356aa)
Putative uncharacterized protein n=2 Tax=Xanthomonas campestris RepID=Q4UVZ7_XANC8 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM51829.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_1358_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6374..6922
DNA (549bp) protein (183aa)
Lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVP6_9GAMM
Lipoprotein {ECO:0000313|EMBL:EIL91287.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1358_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6942..7436)
DNA (495bp) protein (165aa)
cupin n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000362924F
cupin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
scnpilot_solids2_trim150_scaffold_1358_10
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7852..11187
DNA (3336bp) protein (1112aa)
Cyclic di-GMP phosphodiesterase Gmr {ECO:0000313|EMBL:KFB78270.1}; EC=3.1.4.52 {ECO:0000313|EMBL:KFB78270.1};; Flags: Precursor;; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037444C2
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
scnpilot_solids2_trim150_scaffold_1358_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11282..12037
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96788.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein; K09933 hypothetical protein
scnpilot_solids2_trim150_scaffold_1358_12
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12054..12695)
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP37279.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein id=5079109 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
scnpilot_solids2_trim150_scaffold_1358_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12808..13611)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NPP6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89616.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1358_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14063..15733
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHP9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89617.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1358_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16049..17173
DNA (1125bp) protein (375aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE5_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL96786.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
major facilitator superfamily transporter
scnpilot_solids2_trim150_scaffold_1358_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17214..17783)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFE0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98181.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peroxiredoxin
scnpilot_solids2_trim150_scaffold_1358_17
BJP_08E140C01_Desulfomicrobium_58_14, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18052..19800)
DNA (1749bp) protein (583aa)
Putative transmembrane signal peptide protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LSW3_DESBD
transmembrane signal peptide protein
Tax=BJP_08E140C01_Desulfomicrobium_58_14
scnpilot_solids2_trim150_scaffold_1358_18
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19797..20348)
DNA (552bp) protein (184aa)
LemA family protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U802_9GAMM
LemA family protein; K03744 LemA protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_1358_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20705..21136
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KGI77439.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_1358_20
unknown

Not on your lists

21371..21961
DNA (591bp) protein (197aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1358_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22120..22626)
DNA (507bp) protein (169aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE6_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1358_22
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22854..23642)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KJH7_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
scnpilot_solids2_trim150_scaffold_1358_23
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23778..24683
DNA (906bp) protein (302aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Acidovorax sp. CF316 RepID=J1EGG8_9BURK rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJE51354.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
AraC family transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_1358_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25158..26063)
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K8_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL94049.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_1358_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26192..26791
DNA (600bp) protein (200aa)
2-dehydropantoate 2-reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K7_9GAMM rbh
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:EIL94048.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-dehydropantoate 2-reductase; K06988
scnpilot_solids2_trim150_scaffold_1358_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26881..27615
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K6_9GAMM rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL94047.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids2_trim150_scaffold_1358_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27814..28386
DNA (573bp) protein (191aa)
short chain dehydrogenase (EC:1.1.1.-)
Short chain dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VML4_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 27 items

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