ggKbase home page

scnpilot_solids2_trim150_scaffold_1465

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1465_1
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..456)
DNA (456bp) protein (152aa)
GTP-binding protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000371BBDE
NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96057.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
typA; GTP-binding elongation factor protein; K06207 GTP-binding protein
scnpilot_solids2_trim150_scaffold_1465_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(597..884)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W643_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94934.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1465_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

913..1641
DNA (729bp) protein (243aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMD1_9GAMM
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EIM00623.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methyltransferase family protein
scnpilot_solids2_trim150_scaffold_1465_4
Neisseria sicca, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1764..2633
DNA (870bp) protein (290aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|SAAS:SAAS00086366}; EC=4.-.-.- {ECO:0000256|SAAS:SAAS00278209};; EC=4.3.3.7 {ECO:0000256|SAAS:SAAS00086421};; TaxID=1095748 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria sicca VK64.;"
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
dihydrodipicolinate synthase n=1 Tax=Neisseria sicca RepID=UPI0002F03809 rbh
scnpilot_solids2_trim150_scaffold_1465_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2638..4131
DNA (1494bp) protein (498aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:CDM25877.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CDM25877.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWN8_PUSST
scnpilot_solids2_trim150_scaffold_1465_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4182..4889
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0003660620 rbh
restriction endonuclease BglII family protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94779.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids2_trim150_scaffold_1465_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4874..5746)
DNA (873bp) protein (291aa)
Adenine-specific DNA methyltransferase (Modification methylase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1J4_RAMTT rbh
adenine-specific DNA methyltransferase rbh
Adenine-specific DNA methyltransferase (Modification methylase)-like protein {ECO:0000313|EMBL:AEG94778.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids2_trim150_scaffold_1465_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6179..8212
DNA (2034bp) protein (678aa)
Colicin V processing peptidase cysteine peptidase MEROPS family C39 n=1 Tax=Rhodanobacter denitrificans RepID=I4WM06_9GAMM
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain {ECO:0000313|EMBL:AGG90251.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1465_9
unknown

Not on your lists

8543..8929
DNA (387bp) protein (129aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1465_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9205..10458)
DNA (1254bp) protein (418aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTT2_PSEUU
Monooxygenase {ECO:0000313|EMBL:EXL07941.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
scnpilot_solids2_trim150_scaffold_1465_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10641..11336)
DNA (696bp) protein (232aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18 3.2.2.-)
Endonuclease III n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRB1_9GAMM
scnpilot_solids2_trim150_scaffold_1465_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11333..11941)
DNA (609bp) protein (203aa)
RnfABCDGE type electron transport complex subunit B n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKH0_9GAMM
RnfABCDGE type electron transport complex subunit B {ECO:0000313|EMBL:EIL87711.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
electron transport complex, RnfABCDGE type, B subunit
scnpilot_solids2_trim150_scaffold_1465_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11949..14063)
DNA (2115bp) protein (705aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK78_9GAMM
scnpilot_solids2_trim150_scaffold_1465_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14142..14606)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRB7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02009.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1465_15
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14743..15660)
DNA (918bp) protein (306aa)
Xaa-Pro aminopeptidase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3DFA7
Xaa-Pro aminopeptidase family enzyme {ECO:0000313|EMBL:EDL48527.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
Xaa-Pro aminopeptidase family protein
Displaying 15 items

View Taxonomy