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scnpilot_solids2_trim150_scaffold_1513

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1513_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(51..1550)
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B0DDC
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EIL94722.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
scnpilot_solids2_trim150_scaffold_1513_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1547..1906)
DNA (360bp) protein (120aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4358
EamA-like transporter family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1513_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1915..2751)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WR36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01928.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
esterase/lipase
scnpilot_solids2_trim150_scaffold_1513_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2823..3755)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A6F94
multidrug resistance efflux pump
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1513_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3752..4522)
DNA (771bp) protein (257aa)
ABC transporter, partial n=1 Tax=Dyella ginsengisoli RepID=UPI000373D3D2
ABC-type antimicrobial peptide transport system, ATPase component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1513_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4519..5652)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXW5_9GAMM
ABC transporter permease {ECO:0000313|EMBL:KGI77759.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC-type transport system, involved in lipoprotein release, permease component
scnpilot_solids2_trim150_scaffold_1513_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5652..7058)
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347F91C
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG88255.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1513_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7234..8628)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034ADFC9 rbh
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_1513_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8621..9295)
DNA (675bp) protein (225aa)
transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI0002F82FB7
Transcriptional regulator {ECO:0000313|EMBL:AIF47378.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; K02483 two-component system, OmpR family, response regulator
scnpilot_solids2_trim150_scaffold_1513_10
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9576..10208
DNA (633bp) protein (211aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
sodC2; putative superoxide dismutase; K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TCV5_9GAMM
scnpilot_solids2_trim150_scaffold_1513_11
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10361..11227)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X2S7_DESRD rbh
NODE_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96281.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein; K02069 putative ABC transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_1513_12
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11224..11889)
DNA (666bp) protein (222aa)
ABC transporter related protein n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X2S6_DESRD
NODE_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96280.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
ABC transporter; K02068 putative ABC transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1513_13
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11924..12520)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHS3_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG09054.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
scnpilot_solids2_trim150_scaffold_1513_14
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12576..12872)
DNA (297bp) protein (99aa)
arsr family transcriptional regulator n=1 Tax=Microbulbifer agarilyticus RepID=UPI0002559460
regulatory protein ArsR
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1513_15
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12872..13444)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255945F
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1513_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13659..15176
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA95_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying 16 items

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