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scnpilot_solids2_trim150_scaffold_1564

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1564_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(117..1514)
DNA (1398bp) protein (466aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Coproporphyrinogen-III oxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE57_9GAMM
oxygen-independent coproporphyrinogen III oxidase
scnpilot_solids2_trim150_scaffold_1564_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1616..2602)
DNA (987bp) protein (329aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMF6_9GAMM
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1564_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2631..3929)
DNA (1299bp) protein (433aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMF7_9GAMM
scnpilot_solids2_trim150_scaffold_1564_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3939..5036)
DNA (1098bp) protein (366aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAU6_9GAMM
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:KGI78464.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
4-hydroxyphenylpyruvate dioxygenase
scnpilot_solids2_trim150_scaffold_1564_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5144..5635
DNA (492bp) protein (164aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU7_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL92388.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_1564_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5809..6297)
DNA (489bp) protein (163aa)
endoribonuclease L-PSP n=1 Tax=Variovorax paradoxus RepID=UPI000372F7CC
Variovorax paradoxus strain MEDvA23 contig_48, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28405.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
endoribonuclease L-PSP
scnpilot_solids2_trim150_scaffold_1564_7
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6382..8037)
DNA (1656bp) protein (552aa)
acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QGH5_AZOSU
AMP-binding enzyme family protein {ECO:0000313|EMBL:KIN92295.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
scnpilot_solids2_trim150_scaffold_1564_8
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8043..10571)
DNA (2529bp) protein (843aa)
Alpha-L-rhamnosidase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F7T8_CONWI rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS27259.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
alpha-L-rhamnosidase rbh
scnpilot_solids2_trim150_scaffold_1564_9

Not on your lists

comp(10607..11443)
DNA (837bp) protein (279aa)
Dienelactone hydrolase n=1 Tax=mine drainage metagenome RepID=T1CIK0_9ZZZZ
Dienelactone hydrolase {ECO:0000313|EMBL:EQD67345.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1564_10

Not on your lists

11526..13847
DNA (2322bp) protein (774aa)
TonB-dependent receptor domain protein (Fragment) n=3 Tax=mine drainage metagenome RepID=T0ZD68_9ZZZZ
TonB-dependent receptor domain protein {ECO:0000313|EMBL:EQD42978.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TonB-dependent receptor
scnpilot_solids2_trim150_scaffold_1564_11
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13919..14815
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0003162D2C
Uncharacterized protein {ECO:0000313|EMBL:EQB86751.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
major facilitator superfamily transporter
Displaying 11 items

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