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scnpilot_solids2_trim150_scaffold_1729

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1729_1
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1104)
DNA (1104bp) protein (368aa)
transporter n=1 Tax=Sphingobium xenophagum RepID=UPI00037F0EA5
Type IV secretion/conjugal transfer ATPase {ECO:0000313|EMBL:EJU11507.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
type IV secretion/conjugal transfer ATPase; K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_1729_2
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1097..1435)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NBZ6_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB19007.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
type IV secretory pathway VirB3 component
scnpilot_solids2_trim150_scaffold_1729_3
unknown

Not on your lists

comp(1469..1735)
DNA (267bp) protein (89aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1729_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1735..2046)
DNA (312bp) protein (104aa)
type VI secretion protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EAFB4C
Uncharacterized protein {ECO:0000313|EMBL:EKU72538.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
VIRB2 type IV secretion fmaily protein; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_1729_5
unknown

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comp(2046..2300)
DNA (255bp) protein (85aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1729_6
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2297..3337)
DNA (1041bp) protein (347aa)
conjugal transfer protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036CA97A rbh
Muramidase {ECO:0000313|EMBL:KHA62653.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
putative type IV secretion system protein VirB1; K03194 type IV secretion system protein VirB1
scnpilot_solids2_trim150_scaffold_1729_7
Novosphingobium sp. MBES04, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3562..4137
DNA (576bp) protein (192aa)
DNA resolvase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IBX3_9SPHN
DNA resolvase {ECO:0000313|EMBL:GAM07493.1}; TaxID=1206458 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MBES04.;"
DNA resolvase
scnpilot_solids2_trim150_scaffold_1729_8
unknown

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comp(4115..4351)
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1729_9
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4429..4686)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000366C607
XRE family transcriptional regulator
Xre-family transcriptional regulator {ECO:0000313|EMBL:BAI99208.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_solids2_trim150_scaffold_1729_10
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5043..5276
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IBX8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89803.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_solids2_trim150_scaffold_1729_11
unknown

Not on your lists

5465..5791
DNA (327bp) protein (109aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1729_12
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5954..7219
DNA (1266bp) protein (422aa)
replication protein C n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD835 rbh
Replication protein C {ECO:0000313|EMBL:KKC24076.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
replication protein C
scnpilot_solids2_trim150_scaffold_1729_13
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7580..8623
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A05DBA rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB00415.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1729_14
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8627..8929)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003645677
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
scnpilot_solids2_trim150_scaffold_1729_15
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9089..9931
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J0V9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB17760.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1729_16
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9949..10704
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037D1904
Uncharacterized protein {ECO:0000313|EMBL:KHA62709.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1729_17
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10720..11043
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J280_9SPHN
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
single-stranded DNA-binding protein
scnpilot_solids2_trim150_scaffold_1729_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11395..11736)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000373F04A
Sphingomonas taxi strain 30a NODE_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28259.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1729_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11829..12260)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003693CD3
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65190.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_solids2_trim150_scaffold_1729_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12884..13060
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D065_SPHYA
XRE family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EKU72352.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
scnpilot_solids2_trim150_scaffold_1729_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13057..13308)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8R6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59341.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
Displaying 21 items

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