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scnpilot_solids2_trim150_scaffold_1800

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1800_1
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..1598)
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037E3629 rbh
CoA-binding protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
scnpilot_solids2_trim150_scaffold_1800_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1595..2758)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F4R8_9BURK rbh
acyl-CoA dehydrogenase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
scnpilot_solids2_trim150_scaffold_1800_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2904..3710)
DNA (807bp) protein (269aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JWG9_9PROT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EKE78957.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
NAD-dependent epimerase/dehydratase
scnpilot_solids2_trim150_scaffold_1800_4
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3762..4697)
DNA (936bp) protein (312aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
Branched-chain amino acid aminotransferase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LR31_HALO1 rbh
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ACY15539.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
scnpilot_solids2_trim150_scaffold_1800_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4791..5594)
DNA (804bp) protein (268aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA03_STAND
binding-protein-dependent transporters inner membrane component; K02053 putative spermidine/putrescine transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH90790.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1800_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5591..6481)
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA02_STAND
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH90789.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1800_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6478..7557)
DNA (1080bp) protein (360aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA01_STAND rbh
spermidine/putrescine ABC transporter ATPase rbh
scnpilot_solids2_trim150_scaffold_1800_8
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7578..8672)
DNA (1095bp) protein (365aa)
Extracellular solute-binding family protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S962_9BURK rbh
Extracellular solute-binding family protein {ECO:0000313|EMBL:EHP40912.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
family 1 extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_1800_9
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9134..10036
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y3P5_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EMS41792.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
scnpilot_solids2_trim150_scaffold_1800_10
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10092..10697)
DNA (606bp) protein (202aa)
glutathione S-transferase (EC:2.5.1.18)
Putative glutathione S-transferase {ECO:0000313|EMBL:CAX25884.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CAX25884.1};; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
glutathione S-transferase n=1 Tax=Variovorax paradoxus RepID=UPI0003627806
scnpilot_solids2_trim150_scaffold_1800_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10750..11877)
DNA (1128bp) protein (376aa)
putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein
Putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; Glycolate oxidase id=3831002 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
scnpilot_solids2_trim150_scaffold_1800_12
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12077..12868
DNA (792bp) protein (264aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8HG43_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EZP05783.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
Displaying 12 items

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