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scnpilot_solids2_trim150_scaffold_1815

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1815_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..219
DNA (219bp) protein (73aa)
UPI0003CF3579 related cluster n=1 Tax=unknown RepID=UPI0003CF3579
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EZQ14593.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
conjugation TrbI-like protein; K03195 type IV secretion system protein VirB10
scnpilot_solids2_trim150_scaffold_1815_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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216..1241
DNA (1026bp) protein (342aa)
UPI0003CED436 related cluster n=1 Tax=unknown RepID=UPI0003CED436 rbh
Type VI secretion protein {ECO:0000313|EMBL:EZQ14594.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
scnpilot_solids2_trim150_scaffold_1815_3
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1258..3408
DNA (2151bp) protein (717aa)
UPI0003CE343C related cluster n=1 Tax=unknown RepID=UPI0003CE343C
Uncharacterized protein {ECO:0000313|EMBL:EZQ14636.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
TRAG protein; K03205 type IV secretion system protein VirD4
scnpilot_solids2_trim150_scaffold_1815_4
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3894..4250)
DNA (357bp) protein (119aa)
DNA-invertase from lambdoid prophage e14 n=1 Tax=Rhizobium sp. RepID=L0NMU4_RHISP
DNA-invertase from lambdoid prophage e14 {ECO:0000313|EMBL:CCF22395.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
transposon Tn552 DNA-invertase BinR
scnpilot_solids2_trim150_scaffold_1815_5
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4572..5591)
DNA (1020bp) protein (340aa)
UPI0003D007A6 related cluster n=1 Tax=unknown RepID=UPI0003D007A6 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ11315.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_1815_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5657..6550
DNA (894bp) protein (298aa)
UPI0003D04F1F related cluster n=1 Tax=unknown RepID=UPI0003D04F1F rbh
Putative transcriptional regulator, LysR type {ECO:0000313|EMBL:CDX61874.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1815_7
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6628..7839)
DNA (1212bp) protein (404aa)
Major facilitator superfamily MFS_1 n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X3V0_OCHA4 rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS15904.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
scnpilot_solids2_trim150_scaffold_1815_8
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7843..8895)
DNA (1053bp) protein (351aa)
Arsenical-resistance protein ACR3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCZ3_PELHB rbh
arsenical-resistance protein ACR3; K03325 arsenite transporter, ACR3 family rbh
Arsenical-resistance protein ACR3 {ECO:0000313|EMBL:AEQ52776.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids2_trim150_scaffold_1815_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8919..9461)
DNA (543bp) protein (181aa)
arsenate reductase; K03741 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCZ1_PELHB
Arsenate reductase {ECO:0000313|EMBL:AEQ52774.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids2_trim150_scaffold_1815_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9454..9816)
DNA (363bp) protein (121aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC59_AGRRK
transcriptional regulator protein
ArsR family transcriptional regulator {ECO:0000313|EMBL:KEA07452.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
scnpilot_solids2_trim150_scaffold_1815_11
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9863..10360
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCY9_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52772.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids2_trim150_scaffold_1815_12
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10518..11123)
DNA (606bp) protein (202aa)
Regulatory protein TetR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TK71_MESCW
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:ADV11443.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_1815_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11178..11870
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJX7_AGRRK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:KEA09049.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
scnpilot_solids2_trim150_scaffold_1815_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12094..12480)
DNA (387bp) protein (129aa)
GATS-like protein 1 n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00037B135F
Strain MEJ076 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIP98078.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein; K09707 hypothetical protein
scnpilot_solids2_trim150_scaffold_1815_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12517..12753)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8L5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF17330.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
Displaying 15 items

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