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scnpilot_solids2_trim150_scaffold_1878

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1878_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..2368
DNA (2367bp) protein (789aa)
Penicillin-binding protein 1B n=1 Tax=Rhodanobacter denitrificans RepID=I4WR29_9GAMM
Penicillin-binding protein 1B {ECO:0000256|PIRNR:PIRNR002799}; Short=PBP-1b {ECO:0000256|PIRNR:PIRNR002799};; Short=PBP1b {ECO:0000256|PIRNR:PIRNR002799};; Murein polymerase {ECO:0000256|PIRNR:PIRNR002799}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
penicillin-binding protein 1B
scnpilot_solids2_trim150_scaffold_1878_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2365..2913
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02355.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1878_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2953..4956
DNA (2004bp) protein (668aa)
DNA helicase, Rad3 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB5_9GAMM
DNA helicase, Rad3 {ECO:0000313|EMBL:EIM02357.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA helicase, Rad3
scnpilot_solids2_trim150_scaffold_1878_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5007..5711
DNA (705bp) protein (235aa)
glycoprotease n=1 Tax=Dyella japonica RepID=UPI0002DEC893
Glycoprotease {ECO:0000313|EMBL:AIF47130.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
universal bacterial protein YeaZ
scnpilot_solids2_trim150_scaffold_1878_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5832..6875)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1878_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6963..7859
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NJD7_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG90217.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1878_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7895..9664)
DNA (1770bp) protein (590aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSD3_9GAMM
scnpilot_solids2_trim150_scaffold_1878_8
unknown

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comp(9661..9900)
DNA (240bp) protein (80aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1878_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9902..10171)
DNA (270bp) protein (90aa)
phosphocarrier protein HPr n=1 Tax=Dyella japonica RepID=UPI0002D524AE
Phosphocarrier protein HPr {ECO:0000313|EMBL:AIF47139.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
phosphotransferase system HPr (HPr) family protein
scnpilot_solids2_trim150_scaffold_1878_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10164..10535)
DNA (372bp) protein (124aa)
Phosphotransferase system, mannose/fructose-specific component IIA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T2_9GAMM
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:EIL94473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphotransferase system, mannose/fructose-specific component IIA
scnpilot_solids2_trim150_scaffold_1878_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10606..11511)
DNA (906bp) protein (302aa)
UPF0042 nucleotide-binding protein UU7_04297 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T3_9GAMM
Nucleotide-binding protein UU7_04297 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative P-loop-containing kinase
scnpilot_solids2_trim150_scaffold_1878_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11517..12470)
DNA (954bp) protein (318aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathi
serine kinase of the HPr protein, regulates carbohydrate metabolism (EC:2.7.1.-)
HPr kinase/phosphorylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T4_9GAMM
Displaying 12 items

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