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scnpilot_solids2_trim150_scaffold_1941

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1941_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..94)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK40_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28789.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_1941_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(148..1608)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11H88_MESSB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABG63237.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_1941_3
unknown

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comp(1694..2215)
DNA (522bp) protein (174aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1941_4
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2227..3210)
DNA (984bp) protein (328aa)
Uncharacterized protein UPF0065 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11H86_MESSB
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABG63239.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_1941_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3244..4236)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MTF6_9RHIZ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
scnpilot_solids2_trim150_scaffold_1941_6
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4336..5271)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E2AA0D
LysR family transcriptional regulator {ECO:0000313|EMBL:EKN01436.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1941_7
Ochrobactrum sp. G-1, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5403..6668
DNA (1266bp) protein (422aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
FAD-dependent glyphosate oxidase n=1 Tax=uncultured bacterium RepID=D4NZ75_9BACT rbh
Gox {ECO:0000313|EMBL:ACZ58378.1}; TaxID=694258 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. G-1.;"
scnpilot_solids2_trim150_scaffold_1941_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6905..8296
DNA (1392bp) protein (464aa)
L-serine dehydratase 1 (EC:4.3.1.17); K01752 L-serine dehydratase [EC:4.3.1.17] rbh
L-serine ammonia-lyase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKN5_AFIFE rbh
L-serine ammonia-lyase {ECO:0000313|EMBL:EKS29676.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_1941_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8528..9505)
DNA (978bp) protein (326aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13EW4_RHOPS
helix-turn-helix, AraC type
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABE37375.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
scnpilot_solids2_trim150_scaffold_1941_10
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9813..11459
DNA (1647bp) protein (549aa)
Methyl-accepting chemotaxis protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YFK2_9BRAD rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EHR01669.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
chemotaxis protein rbh
scnpilot_solids2_trim150_scaffold_1941_11
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11521..12150
DNA (630bp) protein (210aa)
Diguanylate cyclase n=2 Tax=Ketogulonicigenium vulgare RepID=E3EYS1_KETVY
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S)
Diguanylate cyclase {ECO:0000313|EMBL:ADO41496.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
Displaying 11 items

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