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scnpilot_solids2_trim150_scaffold_1976

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1976_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..282
DNA (282bp) protein (94aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEI5_9GAMM
orotidine 5''-phosphate decarboxylase, subfamily 2
scnpilot_solids2_trim150_scaffold_1976_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(307..564)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NDH5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87932.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1976_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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745..1476
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ91_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1976_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1525..2718)
DNA (1194bp) protein (398aa)
Lipopolysaccharide modification acyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSJ1_9GAMM
putative acyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1976_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2773..3669)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYD9_STAND
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADH89051.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1976_6
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3780..4256
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7TLV0_9DELT
hypothetical protein
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
scnpilot_solids2_trim150_scaffold_1976_7
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4253..5488
DNA (1236bp) protein (412aa)
MFS transporter n=1 Tax=Rhizobium loti RepID=UPI0003633335 rbh
major facilitator transporter rbh
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
scnpilot_solids2_trim150_scaffold_1976_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5676..6638
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8Q0_9SPHN rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:AHX13497.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_1976_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6826..7296)
DNA (471bp) protein (157aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ90_9GAMM
GCN5-like N-acetyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1976_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7289..7696)
DNA (408bp) protein (136aa)
Rhodanese n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ89_9GAMM
rhodanese
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1976_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7784..8758
DNA (975bp) protein (325aa)
Transcriptional activator FtrA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ88_9GAMM rbh
transcriptional regulator; K13633 AraC family transcriptional regulator, transcriptional activator FtrA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1976_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9269..10102
DNA (834bp) protein (278aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Polaromonas sp. CF318 RepID=J3CYM1_9BURK rbh
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:EJL80926.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
phenazine biosynthesis family protein rbh
scnpilot_solids2_trim150_scaffold_1976_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..10703)
DNA (540bp) protein (180aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptide deformylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZC5_9GAMM rbh
peptide deformylase rbh
scnpilot_solids2_trim150_scaffold_1976_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10775..11578)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE9_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87929.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1976_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11751..11954
DNA (204bp) protein (68aa)
Carbon starvation protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZC7_9GAMM
carbon starvation protein, predicted membrane protein
Carbon starvation protein, predicted membrane protein {ECO:0000313|EMBL:AGG87928.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 15 items

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