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scnpilot_solids2_trim150_scaffold_151

Search features with annotation key words

Displaying items 31-60 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_151_31
unknown

Not on your lists

comp(34480..34605)
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_151_32
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34687..36102)
-----------------
DNA (1416bp)
protein (472aa)
pyridine nucleotide-disulfide oxidoreductase dimerisation region; K00520 mercuric reductase [EC:1.16.1.1]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCS3_AFIFE
Mercuric reductase {ECO:0000313|EMBL:CEG10690.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_151_33
unknown

Not on your lists

comp(36080..36250)
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_151_34
unknown

Not on your lists

comp(36255..36494)
-----------------
DNA (240bp)
protein (80aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_151_35
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36911..38053)
-----------------
DNA (1143bp)
protein (381aa)
Carboxymuconolactone decarboxylase protein {ECO:0000313|EMBL:AJD40194.1}; EC=4.1.1.44 {ECO:0000313|EMBL:AJD40194.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] rbh
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CBU8_9RHIZ rbh
scnpilot_solids2_trim150_scaffold_151_36
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38136..38876)
-----------------
DNA (741bp)
protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNH2_PSEUP
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AER55403.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids2_trim150_scaffold_151_37
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38906..39895)
-----------------
DNA (990bp)
protein (330aa)
Aldo/keto reductase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3B9_ACIDE rbh
Aldo/keto reductase {ECO:0000313|EMBL:EER61031.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
aldo/keto reductase rbh
scnpilot_solids2_trim150_scaffold_151_38
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39967..40767)
-----------------
DNA (801bp)
protein (267aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3C9_ACIDE rbh
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:EER61041.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
5-amino-6-(5-phosphoribosylamino)uracil reductase
scnpilot_solids2_trim150_scaffold_151_39
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40853..41746
-----------------
DNA (894bp)
protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I333_RHOVT rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADP70327.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
scnpilot_solids2_trim150_scaffold_151_40
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41903..42475)
-----------------
DNA (573bp)
protein (191aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GSZ5_PUSST
Uncharacterized protein {ECO:0000313|EMBL:CDM25973.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K09943 hypothetical protein
scnpilot_solids2_trim150_scaffold_151_41
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42414..42755)
-----------------
DNA (342bp)
protein (114aa)
Putative uncharacterized protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RQ95_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGE79946.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_151_42
unknown

Not on your lists

42840..42965
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_151_43

Not on your lists

comp(43271..43981)
-----------------
DNA (711bp)
protein (237aa)
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B1Z1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM26749.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
oxidoreductase FAD/NAD(P)-binding protein rbh
scnpilot_solids2_trim150_scaffold_151_44
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44186..44614)
-----------------
DNA (429bp)
protein (143aa)
PAS protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU85_PUSST
PAS protein
PAS protein {ECO:0000313|EMBL:AEC21054.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids2_trim150_scaffold_151_45
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45194..46306)
-----------------
DNA (1113bp)
protein (371aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KQA3_METC4 rbh
NADH:flavin oxidoreductase/NADH oxidase rbh
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:ACK82139.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
scnpilot_solids2_trim150_scaffold_151_46
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46456..47361
-----------------
DNA (906bp)
protein (302aa)
carbonate dehydratase (EC:4.2.1.1) rbh
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KL33_METEX rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EHP91776.1}; Flags: Precursor;; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
scnpilot_solids2_trim150_scaffold_151_47
unknown

Not on your lists

comp(48591..48800)
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_151_48
unknown

Not on your lists

comp(48890..49162)
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_151_49
unknown

Not on your lists

comp(49248..49544)
-----------------
DNA (297bp)
protein (99aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00035EA0C6
scnpilot_solids2_trim150_scaffold_151_50
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49861..50046)
-----------------
DNA (186bp)
protein (62aa)
hsdR; type I restriction-modification system, R subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
DEAD/DEAH box helicase n=1 Tax=Rhizobium phaseoli RepID=UPI0002DF2794
Helicase, type I site-specific restriction-modification system restriction subunit {ECO:0000313|EMBL:AGA90749.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
scnpilot_solids2_trim150_scaffold_151_51
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50013..50870)
-----------------
DNA (858bp)
protein (286aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E25CDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61037.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_151_52
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50867..51229)
-----------------
DNA (363bp)
protein (121aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRV9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61038.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_151_trna_2
unknown

Not on your lists

comp(52078..52150)
-----------------
DNA (73bp)
transferRNA Met
scnpilot_solids2_trim150_scaffold_151_53
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52505..54634
-----------------
DNA (2130bp)
protein (710aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7V8_9BRAD rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CEG09155.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA rbh
scnpilot_solids2_trim150_scaffold_151_54
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54948..55160
-----------------
DNA (213bp)
protein (71aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7V7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09156.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_151_55
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55331..56290)
-----------------
DNA (960bp)
protein (320aa)
Anti-sigma K factor RskA n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7V6_9BRAD rbh
Putative anti-sigmaE protein {ECO:0000313|EMBL:CEG09157.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_151_56
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56287..56832)
-----------------
DNA (546bp)
protein (182aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7V5_9BRAD rbh
Sigma-K factor {ECO:0000313|EMBL:CEG09158.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids2_trim150_scaffold_151_57
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57022..57441)
-----------------
DNA (420bp)
protein (140aa)
Flagellar export protein FliJ n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFK6_AFIFE
Flagellar export protein FliJ {ECO:0000313|EMBL:EKS29237.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fliJ; flagellar export protein FliJ
scnpilot_solids2_trim150_scaffold_151_58
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57548..58873)
-----------------
DNA (1326bp)
protein (442aa)
fliI; flagellum-specific ATP synthase FliI (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] rbh
ATPase, FliI/YscN family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7V3_9BRAD rbh
ATPase, FliI/YscN family {ECO:0000313|EMBL:EFI51313.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_151_59
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59296..59997
-----------------
DNA (702bp)
protein (234aa)
Cell cycle response regulator CtrA n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLD5_AFIFE rbh
ctrA; cell cycle response regulator; K13584 two-component system, cell cycle response regulator CtrA rbh
Cell cycle response regulator CtrA {ECO:0000313|EMBL:EKS29239.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Displaying items 31-60 of 100 in total

View Taxonomy