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scnpilot_solids2_trim150_scaffold_175

Search features with annotation key words

Displaying items 31-60 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_175_30
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30404..31033
-----------------
DNA (630bp)
protein (210aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0003096E78
ABC transporter {ECO:0000313|EMBL:KJK00804.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
putative lipoprotein
scnpilot_solids2_trim150_scaffold_175_31
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31074..31775)
-----------------
DNA (702bp)
protein (234aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98778.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_175_32
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31905..33590
-----------------
DNA (1686bp)
protein (562aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWI4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91575.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_175_33
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33940..34281
-----------------
DNA (342bp)
protein (114aa)
Sigma 54 modulation protein / S30EA ribosomal protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8D1_SINAD id=5223330 bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ribosomal subunit interface protein
Tax=RBG_16_RIF_WS3X_71_46_curated
scnpilot_solids2_trim150_scaffold_175_34
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34507..36351
-----------------
DNA (1845bp)
protein (615aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
ftsH; cell division protein (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJ79_9ALTE rbh
scnpilot_solids2_trim150_scaffold_175_35
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36537..36926
-----------------
DNA (390bp)
protein (130aa)
Putative small heat shock protein (HSP20) family n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7Q0_HYPSM
small heat shock protein (HSP20) family
Putative small heat shock protein (HSP20) family {ECO:0000313|EMBL:CCB63523.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_solids2_trim150_scaffold_175_36
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36919..39417
-----------------
DNA (2499bp)
protein (833aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lon; DNA-binding ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RCH1_9RHIZ
scnpilot_solids2_trim150_scaffold_175_37
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39721..40110)
-----------------
DNA (390bp)
protein (130aa)
NODE_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96230.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
C4-type zinc finger DksA/TraR family protein id=12495667 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transcriptional regulators, TraR/DksA family protein
scnpilot_solids2_trim150_scaffold_175_38
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40285..41193)
-----------------
DNA (909bp)
protein (303aa)
Thiamine biosynthesis lipoprotein APBE n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P443_AROAE rbh
abpE; thiamine biosynthesis lipoprotein APBE precursor; K03734 thiamine biosynthesis lipoprotein rbh
Thiamine biosynthesis lipoprotein APBE {ECO:0000313|EMBL:CAI07920.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_175_39
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41249..43474)
-----------------
DNA (2226bp)
protein (742aa)
oxidoreductase, FAD-binding; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
Putative Oxidoreductase, FAD-binding n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P442_AROAE rbh
Putative Oxidoreductase, FAD-binding {ECO:0000313|EMBL:CAI07921.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_175_40
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43506..43976)
-----------------
DNA (471bp)
protein (157aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P441_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07922.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_175_41
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44117..44440)
-----------------
DNA (324bp)
protein (108aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P440_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07923.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_175_42
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44644..47025)
-----------------
DNA (2382bp)
protein (794aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
phosphoketolase; K01621 phosphoketolase [EC:4.1.2.9]
Probable phosphoketolase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEQ1_NITSI
scnpilot_solids2_trim150_scaffold_175_43
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47270..47638)
-----------------
DNA (369bp)
protein (123aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
Acetate kinase n=3 Tax=Azotobacter vinelandii RepID=C1DGM8_AZOVD
ackA-3; acetate kinase
scnpilot_solids2_trim150_scaffold_175_44
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48439..49557)
-----------------
DNA (1119bp)
protein (373aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MGT9_ACIET rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM32762.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids2_trim150_scaffold_175_45
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49623..50450)
-----------------
DNA (828bp)
protein (276aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZU0_THIK1 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW95242.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein; K06966 rbh
scnpilot_solids2_trim150_scaffold_175_46
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50583..52058)
-----------------
DNA (1476bp)
protein (492aa)
RND efflux system outer membrane lipoprotein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU10_9GAMM
RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:EIM02952.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
scnpilot_solids2_trim150_scaffold_175_47
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52088..53212)
-----------------
DNA (1125bp)
protein (375aa)
ABC transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU11_9GAMM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
ABC-type multidrug transport system, permease component
scnpilot_solids2_trim150_scaffold_175_48
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53216..54391)
-----------------
DNA (1176bp)
protein (392aa)
membrane protein n=1 Tax=Pseudomonas stutzeri RepID=UPI000307849C
NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96556.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
ABC transporter; K09686 antibiotic transport system permease protein
scnpilot_solids2_trim150_scaffold_175_49
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54388..56178)
-----------------
DNA (1791bp)
protein (597aa)
Monosaccharide-transporting ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU13_9GAMM
NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96555.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_175_50
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56180..57214)
-----------------
DNA (1035bp)
protein (345aa)
Multidrug resistance efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NG44_9GAMM
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGG89869.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_175_51
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57490..57930)
-----------------
DNA (441bp)
protein (147aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6YAX0_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK53784.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
scnpilot_solids2_trim150_scaffold_175_52
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57942..58556)
-----------------
DNA (615bp)
protein (205aa)
TetR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WYP7_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG89867.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_175_53
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58898..60331)
-----------------
DNA (1434bp)
protein (478aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] rbh
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Pyruvate kinase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AHE3_NITEC rbh
scnpilot_solids2_trim150_scaffold_175_54
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60620..61768
-----------------
DNA (1149bp)
protein (383aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BPU2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EAR22097.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_175_55
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62157..64838
-----------------
DNA (2682bp)
protein (894aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003734943
Acetyltransferase {ECO:0000313|EMBL:EKE72130.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
acetyltransferase; K09181 hypothetical protein
scnpilot_solids2_trim150_scaffold_175_56
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64937..65767
-----------------
DNA (831bp)
protein (277aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HD13_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB10842.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_175_57
unknown

Not on your lists

comp(65987..66205)
-----------------
DNA (219bp)
protein (73aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_175_58
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66198..66728)
-----------------
DNA (531bp)
protein (177aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5U1_AROAE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
scnpilot_solids2_trim150_scaffold_175_59
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66987..67763)
-----------------
DNA (777bp)
protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY62_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92153.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K07090
Displaying items 31-60 of 76 in total

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