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scnpilot_solids2_trim150_scaffold_198

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_198_1
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..546)
DNA (546bp) protein (182aa)
Putative transcriptional regulator (Fragment) n=1 Tax=Caulobacter crescentus OR37 RepID=R0E7K3_CAUCE
Putative transcriptional regulator {ECO:0000313|EMBL:ENZ78109.1}; Flags: Fragment;; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
ParB domain-containing protein nuclease
scnpilot_solids2_trim150_scaffold_198_2
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(733..1506)
DNA (774bp) protein (258aa)
Uncharacterized protein n=3 Tax=Sphingobium RepID=D4Z982_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB33756.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
scnpilot_solids2_trim150_scaffold_198_3
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1506..1877)
DNA (372bp) protein (124aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAA4_OLICO
Single-stranded DNA endonuclease {ECO:0000313|EMBL:KIC55704.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_198_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1874..2830)
DNA (957bp) protein (319aa)
Antirestriction protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B849_9RHIZ rbh
antirestriction protein rbh
Antirestriction protein {ECO:0000313|EMBL:AGK59804.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_198_5
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2986..3252
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8I9Z3_METNO
Uncharacterized protein {ECO:0000313|EMBL:GAJ30552.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein; K07807 hypothetical protein NreA
scnpilot_solids2_trim150_scaffold_198_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3261..4610
DNA (1350bp) protein (450aa)
Putative transmembrane efflux protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U880_9RHIZ rbh
Putative transmembrane efflux protein {ECO:0000313|EMBL:ENN86443.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transmembrane efflux protein rbh
scnpilot_solids2_trim150_scaffold_198_7
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4637..6055
DNA (1419bp) protein (473aa)
UPI0003D5A94D related cluster n=1 Tax=unknown RepID=UPI0003D5A94D rbh
Transposase {ECO:0000313|EMBL:KHJ53927.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
transposase IS4 family protein
scnpilot_solids2_trim150_scaffold_198_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6196..6429)
DNA (234bp) protein (78aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK08_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIZ40667.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
scnpilot_solids2_trim150_scaffold_198_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6426..6803)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B1595
DNA-binding protein, putative {ECO:0000313|EMBL:EGP55076.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
helix-turn-helix domain-containing protein
scnpilot_solids2_trim150_scaffold_198_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6809..7174)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363B6CA
Uncharacterized protein {ECO:0000313|EMBL:KEZ18655.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_198_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7187..7483)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIH9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27485.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_198_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7476..8894)
DNA (1419bp) protein (473aa)
integrase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037AE0A0 rbh
Integrase family protein {ECO:0000313|EMBL:KEQ55366.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
integrase family protein rbh
scnpilot_solids2_trim150_scaffold_198_13
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9171..9899
DNA (729bp) protein (243aa)
glutamine amidotransferase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
Glutamine amidotransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CI56_9RHIZ
Glutamine amidotransferase {ECO:0000313|EMBL:EIZ83150.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
scnpilot_solids2_trim150_scaffold_198_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9878..11593)
DNA (1716bp) protein (572aa)
cytochrome C biogenesis protein n=1 Tax=Dyella japonica RepID=UPI000319A302
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AIF47424.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
cytochrome c biogenesis protein
scnpilot_solids2_trim150_scaffold_198_15
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11755..12591
DNA (837bp) protein (279aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
lactate dehydrogenase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000375A7B4
hypothetical protein; K07115
scnpilot_solids2_trim150_scaffold_198_trna_1
unknown

Not on your lists

12747..12833
DNA (87bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_198_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13131..13604)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C9_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25894.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_solids2_trim150_scaffold_198_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13604..13888)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C8_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25895.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_solids2_trim150_scaffold_198_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14059..14847
DNA (789bp) protein (263aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
DNA methylase N-4/N-6 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C7_NOVAD
DNA methylase N-4/N-6
scnpilot_solids2_trim150_scaffold_198_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14840..15328
DNA (489bp) protein (163aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
DNA methylase N-4/N-6 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C7_NOVAD
DNA methylase N-4/N-6
scnpilot_solids2_trim150_scaffold_198_20
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15325..15897
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RFT9_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI71027.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
scnpilot_solids2_trim150_scaffold_198_21
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15894..16460
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU20_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36519.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_198_22
unknown

Not on your lists

16683..17105
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B655A5
scnpilot_solids2_trim150_scaffold_198_23
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17596..17982)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036E18D1
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:EKE71540.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
sdhD; succinate dehydrogenase, hydrophobic membrane anchor subunit
scnpilot_solids2_trim150_scaffold_198_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17987..18385)
DNA (399bp) protein (133aa)
succinate dehydrogenase subunit C (EC:1.3.5.1); K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE65_9GAMM
Succinate dehydrogenase, cytochrome b subunit {ECO:0000313|EMBL:EIL97756.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_198_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18406..19245)
DNA (840bp) protein (280aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE66_9GAMM
scnpilot_solids2_trim150_scaffold_198_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19299..20522)
DNA (1224bp) protein (408aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SVA9_CAUSK rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:GAK43773.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acyl-CoA dehydrogenase domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_198_27
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20952..21155)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EI08_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ35802.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
scnpilot_solids2_trim150_scaffold_198_28
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21152..22447)
DNA (1296bp) protein (432aa)
Blr5774 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89I65_BRADU rbh
sulfide-quinone reductase rbh
Sulfide-quinone reductase {ECO:0000313|EMBL:BAR53739.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
scnpilot_solids2_trim150_scaffold_198_29
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22584..22937
DNA (354bp) protein (118aa)
Putative transcriptional regulatory protein, Ars family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TRB5_9BRAD
Putative transcriptional regulatory protein, Ars family {ECO:0000313|EMBL:CCE09003.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transcriptional regulator
Displaying items 1-30 of 78 in total

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