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scnpilot_solids2_trim150_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_216_1
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1498
DNA (1497bp) protein (499aa)
aspartate kinase (EC:4.1.1.20 2.7.2.4)
aspartate kinase n=1 Tax=Dyella ginsengisoli RepID=UPI00034AF2E8
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids2_trim150_scaffold_216_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1503..2876
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4M5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97058.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_216_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3721..5079
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLZ8_9GAMM
scnpilot_solids2_trim150_scaffold_216_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5206..6495
DNA (1290bp) protein (430aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIM0_9GAMM rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL87061.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
nitrate/nitrite transporter
scnpilot_solids2_trim150_scaffold_216_5
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6523..9708)
DNA (3186bp) protein (1062aa)
Glycosyl hydrolase BNR repeat-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EMD9_RUNSL
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:AEI50577.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
glycosyl hydrolase BNR repeat-containing protein
scnpilot_solids2_trim150_scaffold_216_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9875..12751)
DNA (2877bp) protein (959aa)
Outer membrane cobalamin receptor protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFT1_9GAMM
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:EIL98322.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane receptor for ferrienterochelin and colicins
scnpilot_solids2_trim150_scaffold_216_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12937..15711)
DNA (2775bp) protein (925aa)
Putative lipoprotein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD71_9GAMM
Putative lipoprotein {ECO:0000313|EMBL:EIL97412.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Zinc carboxypeptidase
scnpilot_solids2_trim150_scaffold_216_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16151..19945)
DNA (3795bp) protein (1265aa)
Pathogenicity protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVY5_9GAMM
Pathogenicity protein {ECO:0000313|EMBL:EIL91376.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_216_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19949..21718)
DNA (1770bp) protein (590aa)
Outer membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH26_9GAMM
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG90255.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_216_10
unknown

Not on your lists

comp(22205..22777)
DNA (573bp) protein (191aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_216_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23104..25704)
DNA (2601bp) protein (867aa)
Putative Beta-(1-3)-glucosyl transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVY3_9GAMM rbh
Putative Beta-(1-3)-glucosyl transferase {ECO:0000313|EMBL:EIL91374.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
exo-beta-1,3-glucanase
scnpilot_solids2_trim150_scaffold_216_12
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25891..26706)
DNA (816bp) protein (272aa)
suhB; myo-inositol-1(or 4)-monophosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AM88_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KFN49452.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
scnpilot_solids2_trim150_scaffold_216_13
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26711..28057)
DNA (1347bp) protein (449aa)
Sugar phosphate permease n=1 Tax=Caulobacter sp. AP07 RepID=J2GSC9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KFN49453.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
sugar phosphate permease; K07783 MFS transporter, OPA family, sugar phosphate sensor protein UhpC
scnpilot_solids2_trim150_scaffold_216_14
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28148..29644)
DNA (1497bp) protein (499aa)
iolA; malonate-semialdehyde dehydrogenase IolA; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Malonate-semialdehyde dehydrogenase IolA n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H4I8_CAUCN
Methylmalonate-semialdehyde dehydrogenase, putative {ECO:0000313|EMBL:AAK23283.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
scnpilot_solids2_trim150_scaffold_216_15
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29648..30466)
DNA (819bp) protein (273aa)
iolB; myo-inositol catabolism protein IolB; K03337 5-deoxy-glucuronate isomerase [EC:5.3.1.-]
5-deoxyglucuronate isomerase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000363A8D6
Uncharacterized protein {ECO:0000313|EMBL:KFN49455.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
scnpilot_solids2_trim150_scaffold_216_16
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30466..31356)
DNA (891bp) protein (297aa)
hypothetical protein; K03335 inosose dehydratase [EC:4.2.1.44] rbh
Myo-inositol catabolism protein IolE n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H4I6_CAUCN rbh
IolE protein {ECO:0000313|EMBL:AAK23281.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
scnpilot_solids2_trim150_scaffold_216_17
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31353..33185)
DNA (1833bp) protein (611aa)
iolD; myo-inositol catabolism protein IolD; K03336 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [EC:3.7.1.-]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037854EC
Acetolactate synthase {ECO:0000313|EMBL:EJL33309.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_216_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33187..35124)
DNA (1938bp) protein (646aa)
iolC; 5-dehydro-2-deoxygluconokinase IolC (EC:2.7.1.92); K03338 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] rbh
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GSD5_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL33310.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_216_19
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35211..36101)
DNA (891bp) protein (297aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J3AKR1_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KFN49459.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
SIS domain-containing protein
scnpilot_solids2_trim150_scaffold_216_20
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36258..37262
DNA (1005bp) protein (335aa)
myo-inositol 2-dehydrogenase; K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18]
Inositol 2-dehydrogenase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2A4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFN49460.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
scnpilot_solids2_trim150_scaffold_216_21
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37255..38232
DNA (978bp) protein (326aa)
idhA; myo-inositol 2-dehydrogenase IdhA (EC:1.1.1.18); K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18]
inositol 2-dehydrogenase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000376C8EC
Uncharacterized protein {ECO:0000313|EMBL:KFN49461.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
scnpilot_solids2_trim150_scaffold_216_22
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38316..39650)
DNA (1335bp) protein (445aa)
appA; phosphoanhydride phosphohydrolase; K01093 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
histidine acid phosphatase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000372B511
Histidine acid phosphatase {ECO:0000313|EMBL:EJL33314.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_216_23
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39841..42141)
DNA (2301bp) protein (767aa)
hypothetical protein, partial n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000378C153 rbh
Ferripyoverdine receptor {ECO:0000313|EMBL:CCP39718.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids2_trim150_scaffold_216_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42474..44093
DNA (1620bp) protein (540aa)
Peptidase S53 propeptide n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCP4_9GAMM rbh
Peptidase S53 propeptide {ECO:0000313|EMBL:EIL97235.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
kumamolisin; K08677 kumamolisin
scnpilot_solids2_trim150_scaffold_216_25
unknown

Not on your lists

44090..44296
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_216_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44362..47451)
DNA (3090bp) protein (1030aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA-directed DNA polymerase III PolC; K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTA3_9GAMM
scnpilot_solids2_trim150_scaffold_216_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47448..48851)
DNA (1404bp) protein (468aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIK0_9GAMM
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:EIL99291.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleotidyltransferase/DNA polymerase involved in DNA repair
scnpilot_solids2_trim150_scaffold_216_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48864..49487)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1Z3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93484.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_216_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49487..50107)
DNA (621bp) protein (207aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
LexA repressor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIK2_9GAMM
SOS-response transcriptional repressor, LexA
scnpilot_solids2_trim150_scaffold_216_30
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

50536..53517
DNA (2982bp) protein (994aa)
glycoside hydrolase n=1 Tax=Spirosoma spitsbergense RepID=UPI000382F128 rbh
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:AEE53227.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
glycosyl hydrolase rbh
Displaying items 1-30 of 52 in total

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