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scnpilot_solids2_trim150_scaffold_291

Search features with annotation key words

Displaying items 1-30 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_291_1
unknown

Not on your lists

3..842
DNA (840bp) protein (280aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_291_2
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1572..2537
DNA (966bp) protein (322aa)
Integrase catalytic region n=1 Tax=Rhizobium sp. RepID=L0NIG3_RHISP rbh
Integrase catalytic region {ECO:0000313|EMBL:CCF20885.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
integrase rbh
scnpilot_solids2_trim150_scaffold_291_3
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2579..3457
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGV2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDX30652.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_291_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4025..5491
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DHK4_BRAJP rbh
Integrase {ECO:0000313|EMBL:KGT75310.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_291_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5520..5891
DNA (372bp) protein (124aa)
UPI0003D0273B related cluster n=1 Tax=unknown RepID=UPI0003D0273B
Uncharacterized protein {ECO:0000313|EMBL:ESZ21360.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_291_6
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5891..6286
DNA (396bp) protein (132aa)
UPI0003CF35F3 related cluster n=1 Tax=unknown RepID=UPI0003CF35F3
XRE family transcriptional regulator {ECO:0000313|EMBL:ESX84805.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
helix-turn-helix domain-containing protein
scnpilot_solids2_trim150_scaffold_291_7
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6611..7066)
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2P2A5_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EKF44239.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
AsnC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_291_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7202..9589
DNA (2388bp) protein (796aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transketolase domain-containing protein; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] rbh
Transketolase central region n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I144_9RHIZ rbh
scnpilot_solids2_trim150_scaffold_291_9
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9671..9898)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV5_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHJ54599.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
scnpilot_solids2_trim150_scaffold_291_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9901..11061)
DNA (1161bp) protein (387aa)
Conjugal transfer protein TrbI n=2 Tax=Oligotropha carboxidovorans RepID=F8BJW8_OLICM
trbI2; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AEI05268.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11058..12050)
DNA (993bp) protein (331aa)
Conjugal transfer protein TrbG n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV6_OLICO rbh
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:AEI05267.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12047..12736)
DNA (690bp) protein (230aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV7_OLICO
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AEI05266.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12733..14079)
DNA (1347bp) protein (449aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV8_OLICO
trbL2; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AEI05265.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14079..14369)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV9_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05264.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14393..15154)
DNA (762bp) protein (254aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Oligotropha carboxidovorans RepID=B6JJW0_OLICO
trbJ2; P-type conjugal transfer protein TrbJ
P-type conjugal transfer protein TrbJ {ECO:0000313|EMBL:AEI05263.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15151..17607)
DNA (2457bp) protein (819aa)
Conjugal transfer protein trbE n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW1_OLICO
Conjugal transfer protein trbE {ECO:0000313|EMBL:AEI05262.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
trbE2; conjugal transfer protein trbE; K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_291_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17617..17898)
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW2_OLICO
hypothetical protein; K03198 type IV secretion system protein VirB3
Uncharacterized protein {ECO:0000313|EMBL:AEI05261.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17898..18230)
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW3_OLICO
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Uncharacterized protein {ECO:0000313|EMBL:AEI05260.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_291_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18227..19210)
DNA (984bp) protein (328aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNB2_9SPHN
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ENY79945.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
trbB2; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
scnpilot_solids2_trim150_scaffold_291_20
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19263..19595)
DNA (333bp) protein (111aa)
UPI0003CF74B6 related cluster n=1 Tax=unknown RepID=UPI0003CF74B6
Integrase {ECO:0000313|EMBL:ESY19463.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
Putative transposase,probably encoded by an unidentified IS element protein
scnpilot_solids2_trim150_scaffold_291_21
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19998..22220)
DNA (2223bp) protein (741aa)
lead, cadmium, zinc and mercury-transporting ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5] rbh
UPI0003CDE777 related cluster n=1 Tax=unknown RepID=UPI0003CDE777 rbh
ATPase {ECO:0000313|EMBL:ESW85442.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
scnpilot_solids2_trim150_scaffold_291_22
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22360..22785
DNA (426bp) protein (142aa)
Transcriptional regulator, MerR family n=1 Tax=Rhodovulum sp. PH10 RepID=J6J2R8_9RHOB
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EJW11065.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
MerR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_291_23
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22808..23518)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIL3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV11914.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transporter; K07238 zinc transporter, ZIP family
scnpilot_solids2_trim150_scaffold_291_24
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23598..24149)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3K5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11907.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_291_25
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24428..24835
DNA (408bp) protein (136aa)
UPI0003CDD360 related cluster n=1 Tax=unknown RepID=UPI0003CDD360
Uncharacterized protein {ECO:0000313|EMBL:ESY72820.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
scnpilot_solids2_trim150_scaffold_291_26
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24961..26397
DNA (1437bp) protein (479aa)
Copper oxidase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FEK0_9RHIZ rbh
Copper oxidase {ECO:0000313|EMBL:ESX69990.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
multicopper oxidase, type 3 rbh
scnpilot_solids2_trim150_scaffold_291_27
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26435..26875
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6P2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11946.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_291_28
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26994..27602
DNA (609bp) protein (203aa)
Thiol:disulfide interchange protein cycY n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F905_9RHIZ rbh
Thiol:disulfide interchange protein cycY {ECO:0000313|EMBL:CCV08366.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
cycY; cytochrome c-type biogenesis protein CycY (periplasmic thioredoxin)
scnpilot_solids2_trim150_scaffold_291_29
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27599..28123
DNA (525bp) protein (175aa)
Putative thioredoxin protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWN5_9RHIZ
Putative thioredoxin protein {ECO:0000313|EMBL:CCV08365.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
thioredoxin protein
scnpilot_solids2_trim150_scaffold_291_30
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28138..28425
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B686F4
Uncharacterized protein {ECO:0000313|EMBL:CCV08364.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
Displaying items 1-30 of 116 in total

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