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scnpilot_solids2_trim150_scaffold_295

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_295_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

475..1863
DNA (1389bp) protein (463aa)
Oxidoreductase domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PML3_CHIPD rbh
oxidoreductase domain-containing protein rbh
Oxidoreductase domain protein {ECO:0000313|EMBL:ACU58557.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_295_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1930..2649
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035FEDE8 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58558.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_295_3
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2872..3543
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S515_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY50932.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_295_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3773..5197
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374193C
tRNA nucleotidyltransferase {ECO:0000313|EMBL:KIC93444.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
scnpilot_solids2_trim150_scaffold_295_5
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(5302..5763)
DNA (462bp) protein (154aa)
transposase n=1 Tax=Anaerophaga thermohalophila RepID=UPI0002EB0CF0
tpn; transposase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
scnpilot_solids2_trim150_scaffold_295_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6048..6614
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381B3EF
Uncharacterized protein {ECO:0000313|EMBL:GAO43451.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_295_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6707..7564
DNA (858bp) protein (286aa)
tRNA dimethylallyltransferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreen
tRNA dimethylallyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TED5_NIAKG
scnpilot_solids2_trim150_scaffold_295_8
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7610..8851)
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y406_PEDHD
MFS transporter {ECO:0000313|EMBL:ETZ22565.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
major facilitator superfamily protein
scnpilot_solids2_trim150_scaffold_295_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8963..10090)
DNA (1128bp) protein (376aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Rhizobium sp. CF080 RepID=J2TAM9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETW94517.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
mandelate racemase/muconate lactonizing-like protein
scnpilot_solids2_trim150_scaffold_295_10
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10115..11071)
DNA (957bp) protein (319aa)
ddh1; D-2-hydroxyacid dehydrogenase Ddh (EC:1.1.1.-)
D-2-hydroxyacid dehydrogenase Ddh {ECO:0000313|EMBL:AGC68715.1}; EC=1.1.1.- {ECO:0000313|EMBL:AGC68715.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
D-2-hydroxyacid dehydrogenase Ddh n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VKR6_CLOSH
scnpilot_solids2_trim150_scaffold_295_11

Not on your lists

comp(11093..12412)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003734A5B rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN85849.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_295_12
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12430..13356)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000366799D rbh
dihydrodipicolinate synthetase rbh
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ACU04428.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids2_trim150_scaffold_295_13
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13379..14512)
DNA (1134bp) protein (378aa)
nanH; sialidase (EC:3.2.1.18) rbh
Sialidase, family GH33 id=4403785 bin=GWF2_Bacteroidetes_41_9 species=Zobellia galactanivorans genus=Zobellia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_40_15_curated
scnpilot_solids2_trim150_scaffold_295_14
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14550..15332)
DNA (783bp) protein (261aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUR5_PEDHD rbh
Phytanoyl-CoA dioxygenase rbh
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:ACU03915.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids2_trim150_scaffold_295_15
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15417..16178)
DNA (762bp) protein (254aa)
PhyH family dioxygenase (EC:1.-.-.-) rbh
Dioxygenase, PhyH family {ECO:0000313|EMBL:CAZ95096.1}; EC=1.-.-.- {ECO:0000313|EMBL:CAZ95096.1};; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
Dioxygenase, PhyH family n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0LA68_ZOBGA rbh
scnpilot_solids2_trim150_scaffold_295_16
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16220..16732)
DNA (513bp) protein (171aa)
Kelch repeat type 1-containing protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8Q8_SPHS2
Kelch repeat type 1-containing protein
Kelch repeat type 1-containing protein {ECO:0000313|EMBL:ADZ81100.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_solids2_trim150_scaffold_295_17
Bacteroides sp. 2_1_22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16888..17319
DNA (432bp) protein (144aa)
type IIS restriction endonuclease n=1 Tax=Bacteroides sp. 2_1_7 RepID=UPI0001B4AFE2
Uncharacterized protein {ECO:0000313|EMBL:EEZ03916.1}; TaxID=469588 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_295_18
Treponema medium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(17305..17676)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Treponema medium ATCC 700293 RepID=S3KXN1_TREMD
Uncharacterized protein {ECO:0000313|EMBL:EPF29189.1}; TaxID=1125700 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema medium ATCC 700293.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_295_19
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17820..18425
DNA (606bp) protein (202aa)
Resolvase, N-terminal domain protein n=1 Tax=Capnocytophaga sp. CM59 RepID=J6ID28_9FLAO rbh
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:CEN43837.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
site-specific recombinase, DNA invertase Pin
scnpilot_solids2_trim150_scaffold_295_20
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18638..19792
DNA (1155bp) protein (385aa)
ATPase (AAA+ superfamily)-like protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2H3_PALPW
Uncharacterized protein {ECO:0000313|EMBL:KHJ38487.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
ATPase AAA; K07133
scnpilot_solids2_trim150_scaffold_295_21
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19808..23170
DNA (3363bp) protein (1121aa)
Helicase domain protein n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P1C7_WEEVC rbh
helicase rbh
Helicase domain protein {ECO:0000313|EMBL:ADX68641.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
scnpilot_solids2_trim150_scaffold_295_22
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23456..24292
DNA (837bp) protein (279aa)
Prephenate dehydratase; K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM2_NIAKG
Chorismate mutase {ECO:0000313|EMBL:KIC94222.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids2_trim150_scaffold_295_23
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24320..25531
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003745689 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC91395.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
LL-diaminopimelate aminotransferase
scnpilot_solids2_trim150_scaffold_295_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25546..26394
DNA (849bp) protein (283aa)
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12]
Prephenate dehydrogenase {ECO:0000313|EMBL:AEW00767.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AEW00767.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Prephenate dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM0_NIAKG
scnpilot_solids2_trim150_scaffold_295_25
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26518..27606
DNA (1089bp) protein (363aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; K04516 chorismate mutase [EC:5.4.99.5]
cytochrome C4 n=1 Tax=Segetibacter koreensis RepID=UPI00036A60AB
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase {ECO:0000313|EMBL:GAO43274.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_295_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27611..28636
DNA (1026bp) protein (342aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036ADCB6
scnpilot_solids2_trim150_scaffold_295_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28683..29960
DNA (1278bp) protein (426aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL5_NIAKG
scnpilot_solids2_trim150_scaffold_295_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

30104..31408
DNA (1305bp) protein (435aa)
GTP-binding protein Der n=1 Tax=Segetibacter koreensis RepID=UPI00036E6C29
GTP-binding protein engA; K03977 GTP-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_295_29
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31421..32527)
DNA (1107bp) protein (369aa)
menE; O-succinylbenzoate-CoA ligase (EC:6.2.1.26)
O-succinylbenzoate-CoA ligase n=1 Tax=Polaribacter sp. MED152 RepID=A2U1H4_9FLAO
O-succinylbenzoic acid--CoA ligase {ECO:0000313|EMBL:EZH75813.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
scnpilot_solids2_trim150_scaffold_295_30
Tamlana sedimentorum, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32540..33577)
DNA (1038bp) protein (346aa)
L-Ala-D/L-Glu epimerase (EC:4.2.1.113) rbh
mandelate racemase n=1 Tax=Polaribacter franzmannii RepID=UPI00036FEB65 rbh
Mandelate racemase {ECO:0000313|EMBL:KJD32710.1}; TaxID=1435349 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana sedimentorum.;"
Displaying items 1-30 of 48 in total

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