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scnpilot_solids2_trim150_scaffold_310

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_310_trna_1
unknown

Not on your lists

130..216
DNA (87bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_310_1
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(278..1033)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JH46_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIF42298.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_310_2
unknown

Not on your lists

comp(1464..2615)
DNA (1152bp) protein (384aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_310_3
unknown

Not on your lists

3308..3514
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_310_4
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4105..4389
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLW3_VEREI
hypothetical protein; K09803 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM58620.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
scnpilot_solids2_trim150_scaffold_310_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4373..4669
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXD5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91876.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_310_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4995..7658
DNA (2664bp) protein (888aa)
TonB-dependent receptor, plug n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXD6_9GAMM rbh
TonB-dependent receptor, plug {ECO:0000313|EMBL:EIL91877.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane receptor for ferrienterochelin and colicins
scnpilot_solids2_trim150_scaffold_310_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7892..8683
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXD7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91878.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_310_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9027..10082
DNA (1056bp) protein (352aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTPase EngC; K06949 ribosome biogenesis GTPase [EC:3.6.1.-] rbh
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXD8_9GAMM rbh
scnpilot_solids2_trim150_scaffold_310_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10245..11807)
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0I6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92977.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_310_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11853..12347
DNA (495bp) protein (165aa)
Transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WJI2_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL99623.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
MarR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_310_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12417..13886)
DNA (1470bp) protein (490aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXD9_9GAMM rbh
Diguanylate cyclase {ECO:0000313|EMBL:EIL91880.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
diguanylate cyclase
scnpilot_solids2_trim150_scaffold_310_12
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14138..15205
DNA (1068bp) protein (356aa)
Prolyl oligopeptidase family protein n=1 Tax=Rheinheimera sp. A13L RepID=F7NSF7_9GAMM
peptidase S15
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_310_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15261..17078)
DNA (1818bp) protein (606aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91881.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_310_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17165..19693)
DNA (2529bp) protein (843aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE1_9GAMM rbh
Diguanylate cyclase {ECO:0000313|EMBL:EIL91882.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_310_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20420..21388
DNA (969bp) protein (323aa)
Transcriptional regulatory protein AraC family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE2_9GAMM rbh
Transcriptional regulatory protein AraC family {ECO:0000313|EMBL:EIL91883.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
AraC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_310_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21423..21800)
DNA (378bp) protein (126aa)
Response regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE3_9GAMM
Response regulator {ECO:0000313|EMBL:EIL91884.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_310_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21887..23074)
DNA (1188bp) protein (396aa)
Na(+)/H(+) antiporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE4_9GAMM rbh
Na(+)/H(+) antiporter {ECO:0000313|EMBL:EIL91885.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Kef-type K+ transport system, membrane component
scnpilot_solids2_trim150_scaffold_310_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23154..24545)
DNA (1392bp) protein (464aa)
Na+/H+ antiporter NhaD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE5_9GAMM rbh
Na+/H+ antiporter NhaD {ECO:0000313|EMBL:EIL91886.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nhaD; Na+/H+ antiporter NhaD rbh
scnpilot_solids2_trim150_scaffold_310_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24629..26146)
DNA (1518bp) protein (506aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE6_9GAMM rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIL91887.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_310_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26279..26686
DNA (408bp) protein (136aa)
GreA/GreB family elongation factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE7_9GAMM
GreA/GreB family elongation factor {ECO:0000313|EMBL:EIL91888.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcription elongation factor
scnpilot_solids2_trim150_scaffold_310_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26742..29132
DNA (2391bp) protein (797aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX04_9GAMM rbh
DNA ligase, NAD-dependent
scnpilot_solids2_trim150_scaffold_310_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29132..30088
DNA (957bp) protein (319aa)
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|SAAS:SAAS00088906}; EC=6.3.1.- {ECO:0000256|SAAS:SAAS00088909};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Lysyl-tRNA synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX05_9GAMM rbh
lysyl-tRNA synthetase-like protein GenX rbh
scnpilot_solids2_trim150_scaffold_310_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30128..30859)
DNA (732bp) protein (244aa)
Aquaporin Z n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNM7_9GAMM
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
MIP family channel protein
scnpilot_solids2_trim150_scaffold_310_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31007..32260)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX06_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91747.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_310_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32266..33105)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX07_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91748.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_310_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33399..34688
DNA (1290bp) protein (430aa)
Major facilitator superfamily permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX08_9GAMM rbh
Major facilitator superfamily permease {ECO:0000313|EMBL:EIL91749.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_310_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34692..35378)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX09_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91750.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TIGR02453 family protein
scnpilot_solids2_trim150_scaffold_310_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35445..36890)
DNA (1446bp) protein (482aa)
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
exonuclease I (EC:3.1.11.1)
Exonuclease I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX10_9GAMM rbh
scnpilot_solids2_trim150_scaffold_310_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36974..37540
DNA (567bp) protein (189aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Oligoribonuclease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX11_9GAMM rbh
oligoribonuclease (3'->5' exoribonuclease)
Displaying items 1-30 of 46 in total

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