ggKbase home page

scnpilot_solids2_trim150_scaffold_314

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_314_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..505
DNA (504bp) protein (168aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUK7_9GAMM
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EIL90779.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_solids2_trim150_scaffold_314_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(519..3578)
DNA (3060bp) protein (1020aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NDL3_9GAMM
cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG88819.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_314_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3903..4805
DNA (903bp) protein (301aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NGN3_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG88818.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_314_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4911..6440
DNA (1530bp) protein (510aa)
Putative ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W660_9GAMM
Putative ATP-binding protein {ECO:0000313|EMBL:EIL94951.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative ATPase
scnpilot_solids2_trim150_scaffold_314_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6655..7422
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4ML80_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK89970.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_314_6
Leptospira broomii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

7438..7896
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Pseudomonas sp. 45MFCol3.1 RepID=UPI00037449D7
Uncharacterized protein {ECO:0000313|EMBL:EQA46249.1}; TaxID=1049789 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira broomii serovar Hurstbridge str. 5399.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_314_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7893..8702
DNA (810bp) protein (270aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WFZ1_9GAMM rbh
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EIL98382.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
negative regulator of beta-lactamase expression
scnpilot_solids2_trim150_scaffold_314_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8771..9175)
DNA (405bp) protein (135aa)
Uncharacterized protein n=3 Tax=Xanthomonas RepID=K8G1I5_9XANT
Membrane protein {ECO:0000313|EMBL:EYR67031.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_314_9
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9264..9752)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI00036950A0
N-acetyltransferase GCN5 {ECO:0000313|EMBL:CEA00879.1}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M76_air.;"
histone acetyltransferase HPA2/related acetyltransferase
scnpilot_solids2_trim150_scaffold_314_10
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10041..10385)
DNA (345bp) protein (115aa)
aldehyde-activating protein n=1 Tax=Nevskia ramosa RepID=UPI0003B68A94
Uncharacterized protein {ECO:0000313|EMBL:KFN48218.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
glutathione-dependent formaldehyde-activating enzyme family protein 2
scnpilot_solids2_trim150_scaffold_314_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10423..11535)
DNA (1113bp) protein (371aa)
DNA repair photolyase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU93_9GAMM
DNA repair photolyase {ECO:0000313|EMBL:EIL90784.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA repair photolyase
scnpilot_solids2_trim150_scaffold_314_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11710..13437)
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PAS9_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP70999.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_314_13
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13728..15581
DNA (1854bp) protein (618aa)
glutamate synthase (nadph) (EC:1.4.1.13)
glutamate synthase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D3496
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_314_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15610..17448
DNA (1839bp) protein (613aa)
Putative 2-oxoacid:acceptor oxidoreductase, alpha subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XLJ9_VARPD rbh
putative 2-oxoacid:acceptor oxidoreductase, alpha subunit rbh
Putative 2-oxoacid:acceptor oxidoreductase, alpha subunit {ECO:0000313|EMBL:AGU53159.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_solids2_trim150_scaffold_314_15

Not on your lists

17450..18505
DNA (1056bp) protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] rbh
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=mine drainage metagenome RepID=T0YFS0_9ZZZZ rbh
2-oxoglutarate ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:EQD34256.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids2_trim150_scaffold_314_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18630..19415
DNA (786bp) protein (262aa)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EIL96978.1}; EC=1.1.1.30 {ECO:0000313|EMBL:EIL96978.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-hydroxybutyrate dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY7_9GAMM
3-hydroxybutyrate dehydrogenase
scnpilot_solids2_trim150_scaffold_314_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19418..20584
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87849.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K07001 NTE family protein
scnpilot_solids2_trim150_scaffold_314_18
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20684..21460
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036049E3
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_60_92
scnpilot_solids2_trim150_scaffold_314_19
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21555..22322
DNA (768bp) protein (256aa)
ABC transporter substrate-binding protein n=1 Tax=Nevskia ramosa RepID=UPI0003B5FCC2
Periplasmic binding protein {ECO:0000313|EMBL:EIT70015.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_314_20
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22496..23659
DNA (1164bp) protein (388aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01559, ECO:0000256|SAAS:SAAS00019080}; EC=1.1.-.- {ECO:0000256|HAMAP-Rule:MF_01559, ECO:0000256|SAAS:SAAS00019079};; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
L-lactate dehydrogenase [cytochrome] n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CAK2_ALCDB rbh
L-lactate dehydrogenase rbh
scnpilot_solids2_trim150_scaffold_314_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23842..27021)
DNA (3180bp) protein (1060aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6U2_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
scnpilot_solids2_trim150_scaffold_314_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27194..28495)
DNA (1302bp) protein (434aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIN3_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL87074.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
major facilitator superfamily protein rbh
scnpilot_solids2_trim150_scaffold_314_23
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28705..30483)
DNA (1779bp) protein (593aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACX94892.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACX94892.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Gamma-glutamyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KVW5_HALNC
scnpilot_solids2_trim150_scaffold_314_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30581..31969)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003795485
Uncharacterized protein {ECO:0000313|EMBL:EIM01519.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
scnpilot_solids2_trim150_scaffold_314_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32111..32689)
DNA (579bp) protein (193aa)
GPR1/FUN34/yaaH family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNF8_9GAMM
GPR1/FUN34/yaaH family protein {ECO:0000313|EMBL:EIL88749.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
GPR1/FUN34/yaaH family protein; K07034
scnpilot_solids2_trim150_scaffold_314_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32760..34151)
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003795485
Uncharacterized protein {ECO:0000313|EMBL:EIM01519.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
scnpilot_solids2_trim150_scaffold_314_27
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34197..36656)
DNA (2460bp) protein (820aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI00030FB71D
Membrane protein {ECO:0000313|EMBL:AIF48031.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
outer membrane receptor for ferrienterochelin and colicins; K02014 iron complex outermembrane recepter protein
scnpilot_solids2_trim150_scaffold_314_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37061..39001
DNA (1941bp) protein (647aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
acetyl-coenzyme A synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBP5_9GAMM
scnpilot_solids2_trim150_scaffold_314_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39088..39756
DNA (669bp) protein (223aa)
LuxR family two component transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA0_9GAMM
LuxR family two component transcriptional regulator {ECO:0000313|EMBL:EIL90791.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids2_trim150_scaffold_314_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39771..43226)
DNA (3456bp) protein (1152aa)
Putative transmembrane two component sensor histidine kinase / response regulator fusion protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ6_9GAMM
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AGG87200.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 36 in total

View Taxonomy