ggKbase home page

scnpilot_solids2_trim150_scaffold_318

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_318_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..883)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI74_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00691.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(970..1548)
DNA (579bp) protein (193aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NNS6_9SPHI
scnpilot_solids2_trim150_scaffold_318_3

Not on your lists

comp(1643..2059)
DNA (417bp) protein (139aa)
Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Holliday junction resolvase n=1 Tax=Niabella aurantiaca RepID=UPI0003716BB9
Marine sediment metagenome DNA, contig: S03H2_S12980 {ECO:0000313|EMBL:GAH66661.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids2_trim150_scaffold_318_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2108..2635)
DNA (528bp) protein (176aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Niabella soli DSM 19437 RepID=H1NNS2_9SPHI
RNA methyltransferase {ECO:0000313|EMBL:AHF15201.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA/rRNA methyltransferase SpoU
scnpilot_solids2_trim150_scaffold_318_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2873..5500
DNA (2628bp) protein (876aa)
DNA mismatch repair protein MutS n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI79_NIAKG
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_6
unknown

Not on your lists

comp(5554..5685)
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_318_7
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5774..6628
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000374AE19
Uncharacterized protein {ECO:0000313|EMBL:AFC37704.1}; TaxID=34085 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer (Moraxella anatipestifer).;"
scnpilot_solids2_trim150_scaffold_318_8
Psychroflexus torquis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6907..7431
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000374159F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU70606.1}; TaxID=313595 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus torquis (strain ATCC 700755 / ACAM 623).;"
scnpilot_solids2_trim150_scaffold_318_9
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7438..7611
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035E802E
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
scnpilot_solids2_trim150_scaffold_318_10
unknown

Not on your lists

7782..8441
DNA (660bp) protein (220aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_318_11
unknown

Not on your lists

8656..9555
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036EF3BC
scnpilot_solids2_trim150_scaffold_318_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9726..10337)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK13_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02951.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_13
unknown

Not on your lists

comp(10482..10682)
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_318_14
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10694..12346)
DNA (1653bp) protein (551aa)
SSS sodium solute transporter superfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCP9_NIAKG
Na+/galactose cotransporter {ECO:0000313|EMBL:KIA94410.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
SSS sodium solute transporter superfamily protein
scnpilot_solids2_trim150_scaffold_318_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12759..14840
DNA (2082bp) protein (694aa)
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7L6_NIAKG
scnpilot_solids2_trim150_scaffold_318_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14874..15434
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7L7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02272.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15671..16339
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7L8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02273.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_18
unknown

Not on your lists

16502..17026
DNA (525bp) protein (175aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_318_19
unknown

Not on your lists

17033..17173
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_318_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17515..18477)
DNA (963bp) protein (321aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMH5_NIAKG
PDZ/DHR/GLGF domain-containing protein
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:AEW01963.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19039..20082
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000362B487 rbh
hypothetical protein; K07577 putative mRNA 3-end processing factor rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW01306.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20082..21758
DNA (1677bp) protein (559aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:KIC90403.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KIC90403.1};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036CC766 rbh
scnpilot_solids2_trim150_scaffold_318_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21831..24368
DNA (2538bp) protein (846aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] rbh
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003773AAD rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:KIC95591.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids2_trim150_scaffold_318_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24825..25481
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003682BA1
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:AEW01337.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_318_25
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25565..27004
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036E8CEA rbh
G-D-S-L family lipolytic protein {ECO:0000313|EMBL:KFC59599.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
G-D-S-L family lipolytic protein rbh
scnpilot_solids2_trim150_scaffold_318_26
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27074..28843
DNA (1770bp) protein (590aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037BEC73 rbh
G-D-S-L family lipolytic protein rbh
Acetylhydrolase {ECO:0000313|EMBL:AKD54209.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
scnpilot_solids2_trim150_scaffold_318_27
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29238..32396
DNA (3159bp) protein (1053aa)
dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00036C39D2 rbh
Dehydrogenase {ECO:0000313|EMBL:ERM83232.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
dehydrogenase
scnpilot_solids2_trim150_scaffold_318_28
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

32523..33545
DNA (1023bp) protein (341aa)
signal peptide protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD29 rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS34225.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_318_29
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

33616..33912
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI0003719B3B
DNA polymerase subunit beta; K07075
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
scnpilot_solids2_trim150_scaffold_318_30
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

33905..34243
DNA (339bp) protein (113aa)
Putative uncharacterized protein id=4497564 bin=GWF2_Bacteroidetes_41_31 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
Displaying items 1-30 of 41 in total

View Taxonomy