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scnpilot_solids2_trim150_scaffold_325

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_325_1
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

430..1254
DNA (825bp) protein (275aa)
Thiol:disulfide interchange protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L580_9GAMM rbh
Dihydroneopterin aldolase {ECO:0000313|EMBL:KGM56450.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
disulfide bond isomerase DsbC/G; K03805 thiol:disulfide interchange protein DsbG rbh
scnpilot_solids2_trim150_scaffold_325_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1263..2123)
DNA (861bp) protein (287aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Rhodanobacter denitrificans RepID=M4NS29_9GAMM
putative S-adenosylmethionine-dependent methyltransferase, YraL family
scnpilot_solids2_trim150_scaffold_325_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2201..4099
DNA (1899bp) protein (633aa)
Putative lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVQ4_9GAMM
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AGG90347.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_325_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4099..4458
DNA (360bp) protein (120aa)
UPF0102 protein UUA_01814 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT05_9GAMM
UPF0102 protein UUA_01814 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR00252 family protein
scnpilot_solids2_trim150_scaffold_325_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4609..5595
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA-dihydrouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHH4_9GAMM
tRNA-U20-dihydrouridine synthase
scnpilot_solids2_trim150_scaffold_325_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5953..8244
DNA (2292bp) protein (764aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
methionine synthase (B12-independent) (EC:2.1.1.14) rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPV2_9GAMM
scnpilot_solids2_trim150_scaffold_325_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8524..9825
DNA (1302bp) protein (434aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0I5_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:EIL92976.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
diguanylate cyclase; K13590 diguanylate cyclase
scnpilot_solids2_trim150_scaffold_325_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10060..11298
DNA (1239bp) protein (413aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
methionine adenosyltransferase (EC:2.5.1.6) rbh
S-adenosylmethionine synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS24_9GAMM
scnpilot_solids2_trim150_scaffold_325_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11383..13263
DNA (1881bp) protein (627aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVR3_9GAMM
ATPase component of ABC transporters with duplicated ATPase domain
ATPase component of ABC transporters with duplicated ATPase domain {ECO:0000313|EMBL:AGG90357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_325_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13315..13944
DNA (630bp) protein (210aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVR4_9GAMM
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGG90358.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_325_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13952..14233
DNA (282bp) protein (94aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVD9_9GAMM
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:EIL91180.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative endonuclease containing a URI domain
scnpilot_solids2_trim150_scaffold_325_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14331..14831)
DNA (501bp) protein (167aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00035D7544
PIN domain-containing protein family protein
scnpilot_solids2_trim150_scaffold_325_13

Not on your lists

comp(14819..15058)
DNA (240bp) protein (80aa)
Putative transcriptional regulator n=1 Tax=mine drainage metagenome RepID=E6QKC2_9ZZZZ
Putative transcriptional regulator {ECO:0000313|EMBL:CBI07689.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_325_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15223..18006)
DNA (2784bp) protein (928aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSY9_9GAMM
scnpilot_solids2_trim150_scaffold_325_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18359..19801
DNA (1443bp) protein (481aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Adenosylhomocysteinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSY8_9GAMM
adenosylhomocysteinase
scnpilot_solids2_trim150_scaffold_325_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19911..20624)
DNA (714bp) protein (238aa)
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034CE504
scnpilot_solids2_trim150_scaffold_325_17
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20749..21435)
DNA (687bp) protein (229aa)
Methyltransferase family protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R7N9_OWEHD
methyltransferase family protein
Methyltransferase family protein {ECO:0000313|EMBL:AEV32392.1}; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
scnpilot_solids2_trim150_scaffold_325_18
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21627..21974)
DNA (348bp) protein (116aa)
toxin ChpA; K07171 mRNA interferase [EC:3.1.-.-]
mRNA interferase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S019_9BURK
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
scnpilot_solids2_trim150_scaffold_325_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21971..22213)
DNA (243bp) protein (81aa)
Programmed cell death antitoxin MazE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL43_9PROT
Programmed cell death antitoxin MazE {ECO:0000313|EMBL:CCU63674.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
abrB; transcriptional regulator AbrB; K07172 antitoxin
scnpilot_solids2_trim150_scaffold_325_20
unknown

Not on your lists

comp(22333..25011)
DNA (2679bp) protein (893aa)
Large exoprotein involved in heme utilization or adhesion n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262544A
scnpilot_solids2_trim150_scaffold_325_21
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25469..28138)
DNA (2670bp) protein (890aa)
hypothetical protein n=3 Tax=Xanthomonas RepID=UPI000345A14C
Outer membrane protein {ECO:0000313|EMBL:KGR60374.1}; Flags: Fragment;; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_325_22
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28472..30178)
DNA (1707bp) protein (569aa)
Polypeptide-transport-associated domain protein ShlB-type n=1 Tax=Acidiphilium sp. PM RepID=F7S9U3_9PROT rbh
Polypeptide-transport-associated domain protein ShlB-type {ECO:0000313|EMBL:EGO94094.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
putative Hemolysin activation/secretion protein
scnpilot_solids2_trim150_scaffold_325_23
unknown

Not on your lists

30326..30487
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_325_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30565..30774
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWB4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90562.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_325_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30801..32675)
DNA (1875bp) protein (625aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal peptide peptidase SppA, 67K type n=1 Tax=Rhodanobacter denitrificans RepID=I4WWB5_9GAMM
signal peptide peptidase SppA, 67K type
scnpilot_solids2_trim150_scaffold_325_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32712..34109)
DNA (1398bp) protein (466aa)
Putative efflux protein, MATE family n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR59_9GAMM
Putative efflux protein, MATE family {ECO:0000313|EMBL:EIL89700.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative efflux protein, MATE family
scnpilot_solids2_trim150_scaffold_325_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34670..36847
DNA (2178bp) protein (726aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Primosome assembly protein PriA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE31_9GAMM
replication restart DNA helicase PriA
scnpilot_solids2_trim150_scaffold_325_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37089..37835)
DNA (747bp) protein (249aa)
Sec-independent protein translocase protein TatC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE32_9GAMM
twin arginine targeting protein translocase subunit TatC
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_325_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37822..38397)
DNA (576bp) protein (192aa)
Sec-independent protein translocase protein TatB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR1_9GAMM
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
twin arginine-targeting protein translocase TatB
scnpilot_solids2_trim150_scaffold_325_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38407..38676)
DNA (270bp) protein (90aa)
Sec-independent protein translocase protein TatA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTR2_9GAMM
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
twin arginine-targeting protein translocase, TatA/E family
Displaying items 1-30 of 39 in total

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