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scnpilot_solids2_trim150_scaffold_334

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_334_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..663
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F93C3
ABC-type transport system permease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_334_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

720..1112
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375F3C8
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_334_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1109..2056
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A3B9 rbh
ABC-type transport system periplasmic component rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_334_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2053..2727
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C5AF3 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96930.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids2_trim150_scaffold_334_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2958..3467
DNA (510bp) protein (170aa)
sterol-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036800B5 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_334_6
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3586..4083)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372FDC3
Putative transcriptional regulator, MarR family {ECO:0000313|EMBL:BAO28316.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
regulatory protein MarR
scnpilot_solids2_trim150_scaffold_334_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4291..5502
DNA (1212bp) protein (404aa)
hemolysin D n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EC01E rbh
acrA; acriflavin resistance protein A rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_334_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5514..8678
DNA (3165bp) protein (1055aa)
multidrug transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036161D3 rbh
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
Hydrophobe/amphiphile efflux-1 HAE1 {ECO:0000313|EMBL:AAZ97370.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids2_trim150_scaffold_334_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8675..10078
DNA (1404bp) protein (468aa)
multidrug transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F19BA rbh
RND efflux system outer membrane lipoprotein NodT rbh
RND efflux system outer membrane lipoprotein NodT {ECO:0000313|EMBL:AAZ97369.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids2_trim150_scaffold_334_10
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10197..11009
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003715F71 rbh
Extradiol ring-cleavage dioxygenase class III protein subunit B
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
scnpilot_solids2_trim150_scaffold_334_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11121..11606)
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
peptidylprolyl isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003687DCF rbh
FKBP-type peptidyl-prolyl cis-trans isomerase protein
scnpilot_solids2_trim150_scaffold_334_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11716..13368
DNA (1653bp) protein (551aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] rbh
glucose-6-phosphate isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003768BEF rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_334_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13358..14800)
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037537DD rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_334_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14902..16194
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037842FC rbh
signal transduction protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_334_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16234..17010
DNA (777bp) protein (259aa)
3''''-5'''' exonuclease n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EA2DC rbh
hypothetical protein; K07501 hypothetical protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_334_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17178..18476
DNA (1299bp) protein (433aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01010}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
23S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000366F57E rbh
scnpilot_solids2_trim150_scaffold_334_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18515..19744
DNA (1230bp) protein (410aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
aspartate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373C037 rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_334_trna_1
unknown

Not on your lists

19788..19878
DNA (91bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_334_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20009..21304
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D7034 rbh
integrase family protein
Integrase family protein {ECO:0000313|EMBL:AEB85419.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids2_trim150_scaffold_334_19
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21756..22085)
DNA (330bp) protein (110aa)
Lactoylglutathione lyase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSQ8_TISMK
lactoylglutathione lyase
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
scnpilot_solids2_trim150_scaffold_334_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22569..22985)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XBW4_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU49640.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_solids2_trim150_scaffold_334_21
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23132..23755
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Pseudomonas fluorescens F113 RepID=G8QA72_PSEFL
TetR family transcriptional regulator
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
scnpilot_solids2_trim150_scaffold_334_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24188..25384)
DNA (1197bp) protein (399aa)
putative transposase id=12494271 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative transposase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
scnpilot_solids2_trim150_scaffold_334_23
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25394..26269)
DNA (876bp) protein (292aa)
integrase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036099C4 rbh
Integrase family protein {ECO:0000313|EMBL:EGW23805.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
phage integrase family protein rbh
scnpilot_solids2_trim150_scaffold_334_24
unknown

Not on your lists

comp(26685..26837)
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_334_25
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27201..28325
DNA (1125bp) protein (375aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW60_ACCPU
efflux transporter RND family, MFP subunit
Nickel and cobalt resistance protein CnrB {ECO:0000313|EMBL:KFB74621.1}; Flags: Precursor;; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
scnpilot_solids2_trim150_scaffold_334_26
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28325..31408
DNA (3084bp) protein (1028aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW59_ACCPU rbh
Cation efflux system protein CzcA {ECO:0000313|EMBL:KFB74620.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
heavy metal efflux pump, CzcA family; K07239 heavy-metal exporter, HME family rbh
scnpilot_solids2_trim150_scaffold_334_27
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31401..31703
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW58_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV37868.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids2_trim150_scaffold_334_28
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31700..32938
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW57_ACCPU
hypothetical protein
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:KFB74618.1}; Flags: Precursor;; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
scnpilot_solids2_trim150_scaffold_334_29
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32931..33668
DNA (738bp) protein (246aa)
Putative ORF1 (Plasmid pTOM9) n=1 Tax=Psychrobacter cryohalolentis (strain K5) RepID=Q1Q9V6_PSYCK rbh
Putative ORF1 [Plasmid pTOM9] {ECO:0000313|EMBL:CDS53349.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
hypothetical protein rbh
Displaying items 1-30 of 46 in total

View Taxonomy