ggKbase home page

scnpilot_solids2_trim150_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_339_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120..3083
DNA (2964bp) protein (988aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycine dehydrogenase, decarboxylating (EC:1.4.4.2) rbh
Glycine dehydrogenase (decarboxylating) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR5_9GAMM rbh
scnpilot_solids2_trim150_scaffold_339_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3168..4241)
DNA (1074bp) protein (358aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Alanine racemase n=1 Tax=Rhodanobacter denitrificans RepID=M4NLU5_9GAMM rbh
alanine racemase rbh
scnpilot_solids2_trim150_scaffold_339_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4241..5599)
DNA (1359bp) protein (453aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
D-amino acid dehydrogenase small subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIT5_9GAMM rbh
glycine/D-amino acid oxidase, deaminating
scnpilot_solids2_trim150_scaffold_339_4
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5679..6191
DNA (513bp) protein (171aa)
Putative leucine-responsive regulatory protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPC1_9GAMM
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGM52792.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_339_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6275..7567)
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPC0_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_339_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7741..8610)
DNA (870bp) protein (290aa)
Protein HflC n=1 Tax=Rhodanobacter denitrificans RepID=M4ND89_9GAMM
membrane protease subunit, stomatin/prohibitin
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_339_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8607..9689)
DNA (1083bp) protein (361aa)
Integral membrane protease subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB7_9GAMM
Integral membrane protease subunit {ECO:0000313|EMBL:EIL89058.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
HflK protein
scnpilot_solids2_trim150_scaffold_339_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9867..11036)
DNA (1170bp) protein (390aa)
GTPase HflX n=1 Tax=Rhodanobacter denitrificans RepID=I4WV77_9GAMM
GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_339_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11224..11484)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000319763A
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
RNA-binding protein Hfq
scnpilot_solids2_trim150_scaffold_339_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11643..12560)
DNA (918bp) protein (306aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B3
tRNA dimethylallyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW36_9GAMM
tRNA isopentenyltransferase MiaA
scnpilot_solids2_trim150_scaffold_339_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12727..13761
DNA (1035bp) protein (345aa)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine 3-dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTK3_9GAMM
scnpilot_solids2_trim150_scaffold_339_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13883..15085
DNA (1203bp) protein (401aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTK5_9GAMM
scnpilot_solids2_trim150_scaffold_339_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15095..15793)
DNA (699bp) protein (233aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW41_9GAMM
pseudouridine synthase family protein
scnpilot_solids2_trim150_scaffold_339_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15949..17118)
DNA (1170bp) protein (390aa)
Outer membrane protein/peptidoglycan-associated (Lipo)protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV2_9GAMM
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:EIL99393.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane protein/peptidoglycan-associated (lipo)protein
scnpilot_solids2_trim150_scaffold_339_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17474..18925)
DNA (1452bp) protein (484aa)
2-methylcitrate dehydratase {ECO:0000313|EMBL:EIL99394.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EIL99394.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV3_9GAMM
scnpilot_solids2_trim150_scaffold_339_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19204..19902
DNA (699bp) protein (233aa)
Membrane protein TerC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VP94_9GAMM
Membrane protein TerC {ECO:0000313|EMBL:EIL89035.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
integral membrane protein, YjbE family
scnpilot_solids2_trim150_scaffold_339_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20048..20656
DNA (609bp) protein (203aa)
Putative glutathione S-transferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2R4_9GAMM
Putative glutathione S-transferase {ECO:0000313|EMBL:EIL93755.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
gst; glutathione S-transferase
scnpilot_solids2_trim150_scaffold_339_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20678..21829)
DNA (1152bp) protein (384aa)
Citrate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV5_9GAMM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-methylcitrate synthase/citrate synthase II
scnpilot_solids2_trim150_scaffold_339_19
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21890..22780)
DNA (891bp) protein (297aa)
2-methylisocitrate lyase (EC:4.1.3.30)
2-methylisocitrate lyase n=1 Tax=Burkholderia sp. TJI49 RepID=F0FYK1_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_339_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22955..24274
DNA (1320bp) protein (440aa)
Na+/H+ dicarboxylate symporter n=1 Tax=Rhodanobacter denitrificans RepID=M4NGB1_9GAMM
Na+/H+ dicarboxylate symporter
Na+/H+ dicarboxylate symporter {ECO:0000313|EMBL:AGG88688.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_339_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24437..25000
DNA (564bp) protein (188aa)
Peroxiredoxin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMG4_9GAMM
Peroxiredoxin {ECO:0000313|EMBL:EIL88405.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
peroxiredoxin
scnpilot_solids2_trim150_scaffold_339_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25118..26722
DNA (1605bp) protein (535aa)
Alkyl hydroperoxide reductase, F subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NLR8_9GAMM
alkyl hydroperoxide reductase, F subunit
Alkyl hydroperoxide reductase, F subunit {ECO:0000313|EMBL:AGG88686.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_339_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26823..27806)
DNA (984bp) protein (328aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Malate dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIW1_9GAMM
malate dehydrogenase
scnpilot_solids2_trim150_scaffold_339_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27925..29124)
DNA (1200bp) protein (400aa)
Class I and II aminotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW55_9GAMM
Class I and II aminotransferase {ECO:0000313|EMBL:EIL91446.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
aspartate/tyrosine/aromatic aminotransferase
scnpilot_solids2_trim150_scaffold_339_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29288..29701)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WV99_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_339_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29902..30411)
DNA (510bp) protein (170aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW58_9GAMM
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
scnpilot_solids2_trim150_scaffold_339_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(30632..31873)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAT9_GEMAT rbh
Peptidase M28 {ECO:0000313|EMBL:AHG92473.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_339_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32020..32505)
DNA (486bp) protein (162aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Cytosine/adenosine deaminase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDP8_9GAMM
cytosine/adenosine deaminase
scnpilot_solids2_trim150_scaffold_339_29
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32661..33134)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002F82558
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AHG65212.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
AsnC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_339_30
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33253..34506
DNA (1254bp) protein (418aa)
N-carbamoyl-l-amino acid amidohydrolase (EC:3.5.1.87) rbh
Allantoate amidohydrolase n=1 Tax=Pseudomonas putida CSV86 RepID=L1LYW6_PSEPU rbh
Allantoate amidohydrolase {ECO:0000313|EMBL:KJA11820.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Displaying items 1-30 of 43 in total

View Taxonomy