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scnpilot_solids2_trim150_scaffold_363

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_363_1
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..855)
DNA (855bp) protein (285aa)
aspartate kinase (EC:4.1.1.20 2.7.2.4)
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLZ5_9GAMM
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids2_trim150_scaffold_363_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1166..2140
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VW05_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91396.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_363_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2248..4065)
DNA (1818bp) protein (606aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Rhodanobacter denitrificans RepID=M4NH11_9GAMM
ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AGG90184.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_363_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4157..4498)
DNA (342bp) protein (114aa)
Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRP6_9GAMM
Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein {ECO:0000313|EMBL:EIM02138.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative methylated DNA-protein cysteine methyltransferase
scnpilot_solids2_trim150_scaffold_363_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4599..5717)
DNA (1119bp) protein (373aa)
Phosphate/sulfate permease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRP4_9GAMM
Phosphate/sulfate permease {ECO:0000313|EMBL:EIM02136.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphate/sulfate permease
scnpilot_solids2_trim150_scaffold_363_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5746..6375)
DNA (630bp) protein (210aa)
Pit accessory protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRP3_9GAMM
Pit accessory protein {ECO:0000313|EMBL:EIM02135.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphate transport regulator related to PhoU
scnpilot_solids2_trim150_scaffold_363_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6524..7849
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKM1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87762.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
CBS domain-containing protein
scnpilot_solids2_trim150_scaffold_363_8
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7863..8423)
DNA (561bp) protein (187aa)
NAD(P)H dehydrogenase (Quinone):NADPH-dependent FMN reductase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46ZQ1_CUPPJ
NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase
NAD(P)H dehydrogenase (Quinone):NADPH-dependent FMN reductase {ECO:0000313|EMBL:AAZ61382.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
scnpilot_solids2_trim150_scaffold_363_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8629..11559)
DNA (2931bp) protein (977aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA95_GEMAT rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
scnpilot_solids2_trim150_scaffold_363_10
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11933..13729
DNA (1797bp) protein (599aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SAQ4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE55476.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_363_11
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13985..14557
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255945F
Uncharacterized protein {ECO:0000313|EMBL:KGM52864.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids2_trim150_scaffold_363_12
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14557..14853
DNA (297bp) protein (99aa)
arsr family transcriptional regulator n=1 Tax=Microbulbifer agarilyticus RepID=UPI0002559460
Uncharacterized protein {ECO:0000313|EMBL:KGM56399.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
ArsR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_363_13
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14901..15500
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHS3_CAUST
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_363_14
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15534..16199
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI00034CD5F1
NODE_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96280.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
ABC transporter; K02068 putative ABC transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_363_15
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16196..17062
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X2S7_DESRD
NODE_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96281.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein; K02069 putative ABC transport system permease protein
scnpilot_solids2_trim150_scaffold_363_16
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17075..18244)
DNA (1170bp) protein (390aa)
Porin {ECO:0000313|EMBL:KGM56108.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Phosphate-selective porin O and P id=2616549 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
phosphate-selective porin O and P; K07221 phosphate-selective porin OprO and OprP rbh
scnpilot_solids2_trim150_scaffold_363_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18516..19148)
DNA (633bp) protein (211aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
sodC2; superoxide dismutase (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5K8B9_STEMA
scnpilot_solids2_trim150_scaffold_363_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19214..19945
DNA (732bp) protein (244aa)
transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034B32F5
Transcriptional regulator {ECO:0000313|EMBL:AIF47378.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids2_trim150_scaffold_363_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19938..21332
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034ADFC9
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_363_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21503..22906
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347F91C rbh
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG88255.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_363_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22906..24039
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXW5_9GAMM rbh
ABC-type transport system, involved in lipoprotein release, permease component
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:AGG88254.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_363_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24036..24803
DNA (768bp) protein (256aa)
ABC transporter, partial n=1 Tax=Dyella ginsengisoli RepID=UPI000373D3D2 rbh
ABC-type antimicrobial peptide transport system, ATPase component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_363_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24800..25732
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A6F94 rbh
multidrug resistance efflux pump
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_363_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25827..26663
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAR5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96556.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
esterase/lipase
scnpilot_solids2_trim150_scaffold_363_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26666..27025
DNA (360bp) protein (120aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4358
EamA-like transporter family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_363_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27022..27462
DNA (441bp) protein (147aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B13EF
Putative transmembrane protein {ECO:0000313|EMBL:EIL96558.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cation/cationic drug transporter
scnpilot_solids2_trim150_scaffold_363_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27466..28677
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B0DDC rbh
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EIL94722.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
scnpilot_solids2_trim150_scaffold_363_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29152..30135
DNA (984bp) protein (328aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNW0_9GAMM rbh
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIL88901.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glycoside hydrolase family protein rbh
scnpilot_solids2_trim150_scaffold_363_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30190..33147)
DNA (2958bp) protein (986aa)
Type III restriction protein res subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WT84_9GAMM rbh
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGG87806.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA/RNA helicase, superfamily II rbh
scnpilot_solids2_trim150_scaffold_363_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33144..35036)
DNA (1893bp) protein (631aa)
Adinene-specific DNA-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT81_9GAMM rbh
adenine specific DNA methylase Mod rbh
Adenine specific DNA methylase Mod {ECO:0000313|EMBL:AGG87809.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 66 in total

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