ggKbase home page

scnpilot_solids2_trim150_scaffold_365

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_365_1
Dickeya solani, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..342)
DNA (342bp) protein (114aa)
Phosphate-binding protein n=1 Tax=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) RepID=D3DK04_HYDTT
pstS; ABC-type phosphate transport system periplasmic phosphate-binding protein; K02040 phosphate transport system substrate-binding protein
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1231725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya solani D s0432-1.;"
scnpilot_solids2_trim150_scaffold_365_2

Not on your lists

508..1506
DNA (999bp) protein (333aa)
Phosphate transport system permease protein PstC n=1 Tax=uncultured bacterium F25-01 RepID=I3VIF9_9BACT
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:AFK79165.1}; TaxID=1191433 species="Bacteria; environmental samples.;" source="uncultured bacterium F25-01.;"
pstC; phosphate transporter permease subunit PstC
scnpilot_solids2_trim150_scaffold_365_3
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1503..2402
DNA (900bp) protein (300aa)
Phosphate ABC transporter, inner membrane subunit PstA n=1 Tax=Frankia sp. EUN1f RepID=D3CXV8_9ACTO
Phosphate transport system permease protein PstA {ECO:0000313|EMBL:KJL31293.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
scnpilot_solids2_trim150_scaffold_365_4
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2399..3337
DNA (939bp) protein (313aa)
phosphate ABC transporter, ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1205910 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
phosphate ABC transporter ATP-binding protein n=1 Tax=Nocardiopsis alkaliphila RepID=UPI00034B56A9 rbh
scnpilot_solids2_trim150_scaffold_365_5
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(3348..3839)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E2M0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN12071.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_365_6
unknown

Not on your lists

comp(3836..4501)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B562E1
hypothetical protein
scnpilot_solids2_trim150_scaffold_365_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(4965..5336)
DNA (372bp) protein (124aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8W2_CONWI
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADB52957.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids2_trim150_scaffold_365_8
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(5404..5640)
DNA (237bp) protein (79aa)
transcriptional regulator n=1 Tax=Patulibacter americanus RepID=UPI0003B77D01
Two-component response regulator SA14-24 {ECO:0000313|EMBL:EHN10820.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
two component transcriptional regulator
scnpilot_solids2_trim150_scaffold_365_9
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

6069..7226
DNA (1158bp) protein (386aa)
Phosphate-binding protein PstS n=1 Tax=Patulibacter medicamentivorans RepID=H0E647_9ACTN rbh
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_365_10
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

7266..8267
DNA (1002bp) protein (334aa)
Phosphate transport system permease protein PstC (TC 3.A.1.7.1) n=1 Tax=Patulibacter medicamentivorans RepID=H0E648_9ACTN
Phosphate transport system permease protein PstC (TC 3.A.1.7.1) {ECO:0000313|EMBL:EHN10817.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
phosphate ABC transporter inner membrane protein; K02037 phosphate transport system permease protein
scnpilot_solids2_trim150_scaffold_365_11
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

8267..9163
DNA (897bp) protein (299aa)
phosphate ABC transporter permease n=1 Tax=Patulibacter americanus RepID=UPI0003B5A183
Phosphate transport system permease protein PstC (TC 3.A.1.7.1) {ECO:0000313|EMBL:EHN10817.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
pstA; putative phosphate ABC transporter permease; K02038 phosphate transport system permease protein
scnpilot_solids2_trim150_scaffold_365_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

9165..10046
DNA (882bp) protein (294aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
phosphate ABC transporter ATPase subunit; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) n=1 Tax=Patulibacter medicamentivorans RepID=H0E649_9ACTN
scnpilot_solids2_trim150_scaffold_365_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10048..10758
DNA (711bp) protein (237aa)
PhoU family transcriptional regulator n=1 Tax=Patulibacter americanus RepID=UPI0003B50DF7
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids2_trim150_scaffold_365_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(10755..11012)
DNA (258bp) protein (86aa)
arsenite S-adenosylmethyltransferase n=1 Tax=Patulibacter americanus RepID=UPI0003B3ACAB
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ADB49026.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids2_trim150_scaffold_365_15

Not on your lists

comp(11028..11177)
DNA (150bp) protein (50aa)
Methyltransferase type 11 id=4759444 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Arsenite s-adenosylmethyltransferase {ECO:0000313|EMBL:AIZ48199.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
type 11 methyltransferase
scnpilot_solids2_trim150_scaffold_365_16
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11174..11335)
DNA (162bp) protein (54aa)
Putative Arsenite S-adenosylmethyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7P1_9BACT
SAM-dependent methyltransferase DSY4148 (UbiE paralog) {ECO:0000313|EMBL:CEL18141.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
arsM; arsenite S-adenosylmethyltransferase
scnpilot_solids2_trim150_scaffold_365_17

Not on your lists

11637..12734
DNA (1098bp) protein (366aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4R659_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKM62599.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase IS116/IS110/IS902 family protein
scnpilot_solids2_trim150_scaffold_365_18

Not on your lists

comp(13010..13480)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Nocardiopsis potens RepID=UPI000365C0FB
Uncharacterized protein {ECO:0000313|EMBL:KKK75878.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Integrase, catalytic region
scnpilot_solids2_trim150_scaffold_365_19
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(13879..14367)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Nocardiopsis gilva RepID=UPI00034A2DA1
transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACZ40387.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
scnpilot_solids2_trim150_scaffold_365_20
unknown

Not on your lists

comp(14367..14951)
DNA (585bp) protein (195aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_365_21
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15418..15849
DNA (432bp) protein (144aa)
Endonuclease DDE n=1 Tax=Streptomyces albulus CCRC 11814 RepID=S0H685_STRA9
Endonuclease DDE {ECO:0000313|EMBL:AJF70342.1}; TaxID=362257 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
putative transposase
scnpilot_solids2_trim150_scaffold_365_22
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16074..16409)
DNA (336bp) protein (112aa)
Transposase DDE domain protein n=1 Tax=Arthrobacter gangotriensis Lz1y RepID=M7MNV5_9MICC
transposase
Tax=RBG_16_Actinobacteria_68_12_curated
scnpilot_solids2_trim150_scaffold_365_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16615..16932)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Actinopolyspora mortivallis RepID=UPI000368DA83
putative transposase
Tax=RBG_16_Actinobacteria_68_12_curated
scnpilot_solids2_trim150_scaffold_365_24
unknown

Not on your lists

comp(17029..17544)
DNA (516bp) protein (172aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_365_25
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18168..19094
DNA (927bp) protein (309aa)
Electron transporter, disulfide bond oxidoreductase D (DsbD) family n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F4T0_ACIC5
electron transporter, disulfide bond oxidoreductase D (DsbD) family
Electron transporter, disulfide bond oxidoreductase D (DsbD) family {ECO:0000313|EMBL:ACO34571.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
scnpilot_solids2_trim150_scaffold_365_26
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19091..19540
DNA (450bp) protein (150aa)
Electron transporter, disulfide bond oxidoreductase D (DsbD) family n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F4T0_ACIC5
electron transporter, disulfide bond oxidoreductase D (DsbD) family
Electron transporter, disulfide bond oxidoreductase D (DsbD) family {ECO:0000313|EMBL:ACO34571.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
scnpilot_solids2_trim150_scaffold_365_27
Clostridium sp. CAG:245, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20037..20252
DNA (216bp) protein (72aa)
heavy metal transporter n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B512CD
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:CDA59111.1}; TaxID=1262784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:245.;"
Heavy metal transport/detoxification protein
scnpilot_solids2_trim150_scaffold_365_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20249..22564
DNA (2316bp) protein (772aa)
Heavy metal translocating P-type ATPase n=1 Tax=Oceanibaculum indicum P24 RepID=K2ID92_9PROT
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EKE67946.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
heavy metal translocating P-type ATPase
scnpilot_solids2_trim150_scaffold_365_29
unknown

Not on your lists

comp(22731..22994)
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_365_30
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(23088..23291)
DNA (204bp) protein (68aa)
Phosphate transport system regulatory protein PhoU n=1 Tax=Patulibacter medicamentivorans RepID=H0E650_9ACTN
Phosphate transport system regulatory protein PhoU {ECO:0000313|EMBL:EHN10819.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
Displaying items 1-30 of 57 in total

View Taxonomy