ggKbase home page

scnpilot_solids2_trim150_scaffold_381

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_381_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..176)
DNA (174bp) protein (58aa)
50S ribosomal protein L31 type B n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX2_9GAMM
ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_381_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(246..1181)
DNA (936bp) protein (312aa)
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNH3_9GAMM rbh
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:EIM01015.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Inosine-uridine nucleoside N-ribohydrolase
scnpilot_solids2_trim150_scaffold_381_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1329..2495)
DNA (1167bp) protein (389aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:AGG90414.1}; EC=3.6.1.- {ECO:0000313|EMBL:AGG90414.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent DNA helicase RecG n=1 Tax=Rhodanobacter denitrificans RepID=M4NHN6_9GAMM
scnpilot_solids2_trim150_scaffold_381_4
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2724..2879)
DNA (156bp) protein (52aa)
Transposase n=2 Tax=Pseudomonas RepID=H7ESU6_PSEST
Putative transposase {ECO:0000313|EMBL:GAD61987.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
transposase
scnpilot_solids2_trim150_scaffold_381_5
Pantoea rodasii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2996..3757)
DNA (762bp) protein (254aa)
SseB protein n=1 Tax=Pantoea sp. YR343 RepID=J3BX11_9ENTR
Enhanced serine sensitivity protein SseB {ECO:0000313|EMBL:KHJ68676.1}; TaxID=1076549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea rodasii.;"
scnpilot_solids2_trim150_scaffold_381_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3936..4799)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFG4_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG88782.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_381_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5345..5923)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9R0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL96201.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_381_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6060..6401)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01187.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_381_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6530..6880)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01186.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_381_10
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7237..7566
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000380AAA7
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7568..8239
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002ECA994
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_12
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8434..10911
DNA (2478bp) protein (826aa)
copper-translocating P-type ATPase (EC:3.6.3.4)
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037A63E2
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10938..12323
DNA (1386bp) protein (462aa)
Beta-lactamase domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMB3_9GAMM rbh
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:EIM00605.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein
scnpilot_solids2_trim150_scaffold_381_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12326..13840
DNA (1515bp) protein (505aa)
Putative thymidine phosphorylase {ECO:0000256|HAMAP-Rule:MF_00703}; EC=2.4.2.4 {ECO:0000256|HAMAP-Rule:MF_00703};; TdRPase {ECO:0000256|HAMAP-Rule:MF_00703}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thymidine phosphorylase (EC:2.4.2.4)
Putative thymidine phosphorylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMB4_9GAMM rbh
scnpilot_solids2_trim150_scaffold_381_15
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13837..14751
DNA (915bp) protein (305aa)
Phosphoribosylpyrophosphate synthetase {ECO:0000313|EMBL:KGO99867.1}; EC=2.7.6.1 {ECO:0000313|EMBL:KGO99867.1};; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030A3926 rbh
scnpilot_solids2_trim150_scaffold_381_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14748..17204
DNA (2457bp) protein (819aa)
D-xylulose 5-phosphate n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D85D71
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_17
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17204..17500
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ90_SPHAL
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
scnpilot_solids2_trim150_scaffold_381_18
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17497..17706
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F79AC5
Uncharacterized protein {ECO:0000313|EMBL:KGM50712.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids2_trim150_scaffold_381_19
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17703..18863
DNA (1161bp) protein (387aa)
acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036F945D
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_20
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18860..19708
DNA (849bp) protein (283aa)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_21
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19705..20898
DNA (1194bp) protein (398aa)
Arabinose efflux permease family protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IN64_9BURK
major facilitator transporter
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_22
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21060..21437
DNA (378bp) protein (126aa)
cfa; cyclopropane fatty acyl phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
cyclopropane fatty acyl phospholipid synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E22C30
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_23
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21451..22098
DNA (648bp) protein (216aa)
hypothetical protein id=12551597 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_381_24
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22131..22640
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GM99_9BACT
Membrane protein {ECO:0000313|EMBL:AHX13347.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_381_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22819..24114)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIF6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99247.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_381_26
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24159..25454)
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344ECB1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN47093.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_381_27
unknown

Not on your lists

25555..25707
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_381_28
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25816..27648)
DNA (1833bp) protein (611aa)
Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Janthinobacterium sp. HH01 RepID=L9P9W3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM56799.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF
scnpilot_solids2_trim150_scaffold_381_29
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27645..28340)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PC44_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGM50856.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_381_30
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28426..31146)
DNA (2721bp) protein (907aa)
TonB-dependent receptor n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PA26_9BURK rbh
TonB-dependent receptor {ECO:0000313|EMBL:KGM56284.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
TonB-dependent receptor rbh
Displaying items 1-30 of 40 in total

View Taxonomy