ggKbase home page

scnpilot_solids2_trim150_scaffold_387

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_387_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1134)
DNA (1134bp) protein (378aa)
Peptidoglycan binding domain/papain family cysteine protease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWR8_9GAMM
Peptidoglycan binding domain/papain family cysteine protease {ECO:0000313|EMBL:EIL91659.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidoglycan binding domain/papain family cysteine protease
scnpilot_solids2_trim150_scaffold_387_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1313..2251)
DNA (939bp) protein (313aa)
PAS/PAC sensor-containing diguanylate cyclase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWR9_9GAMM rbh
PAS/PAC sensor-containing diguanylate cyclase {ECO:0000313|EMBL:EIL91660.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_387_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2408..5065)
DNA (2658bp) protein (886aa)
aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2] rbh
Aminopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW27_9GAMM rbh
Aminopeptidase {ECO:0000313|EMBL:EIL91418.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_387_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5230..5562)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW28_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91419.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_387_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5910..6257
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW29_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91420.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_387_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6327..6599)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW30_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91421.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_387_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6725..9835)
DNA (3111bp) protein (1037aa)
hypothetical protein; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
Type I restriction-modification deoxyribonuclease, r subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIS3_9GAMM rbh
Type I restriction-modification deoxyribonuclease, r subunit {ECO:0000313|EMBL:EIL99364.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_387_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9884..10174)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYD4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92225.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_387_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10171..10443)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYD5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92226.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_387_10
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10567..13134)
DNA (2568bp) protein (856aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q057_ACIAP rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR69978.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_387_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13182..13634)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIS7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99368.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_387_12
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13631..14941)
DNA (1311bp) protein (437aa)
Restriction endonuclease S subunits-like protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=J9Y6W0_ALTMA rbh
restriction endonuclease S subunits-like protein rbh
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
scnpilot_solids2_trim150_scaffold_387_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14938..16773)
DNA (1836bp) protein (612aa)
type I restriction-modification methylase m subunit, n-6 DNA methylase (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
Type I restriction-modification methylase m subunit, n-6 DNA methylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIT0_9GAMM rbh
Type I restriction-modification methylase m subunit, n-6 DNA methylase {ECO:0000313|EMBL:EIL99371.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_387_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16947..18239)
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW31_9GAMM rbh
scnpilot_solids2_trim150_scaffold_387_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18299..18481)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WV74_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIL99380.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_387_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18492..19361)
DNA (870bp) protein (290aa)
Protein HflC n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW32_9GAMM rbh
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
membrane protease subunit, stomatin/prohibitin
scnpilot_solids2_trim150_scaffold_387_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19358..20428)
DNA (1071bp) protein (357aa)
Integral membrane protease subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW33_9GAMM rbh
Integral membrane protease subunit {ECO:0000313|EMBL:EIL91424.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
HflK protein
scnpilot_solids2_trim150_scaffold_387_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20609..21910)
DNA (1302bp) protein (434aa)
GTPase HflX n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW34_9GAMM rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTP-binding protein HflX
scnpilot_solids2_trim150_scaffold_387_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21968..22252)
DNA (285bp) protein (95aa)
RNA-binding protein Hfq n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW35_9GAMM
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA-binding protein Hfq
scnpilot_solids2_trim150_scaffold_387_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22385..23353)
DNA (969bp) protein (323aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B3
tRNA dimethylallyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW36_9GAMM rbh
tRNA isopentenyltransferase MiaA
scnpilot_solids2_trim150_scaffold_387_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23432..25594)
DNA (2163bp) protein (721aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW37_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91428.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidase S46 rbh
scnpilot_solids2_trim150_scaffold_387_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25817..26851
DNA (1035bp) protein (345aa)
L-threonine 3-dehydrogenase (EC:1.1.1.103) rbh
L-threonine 3-dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW38_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_387_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27024..30671
DNA (3648bp) protein (1216aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW39_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91430.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uncharacterized protein involved in outer membrane biogenesis
scnpilot_solids2_trim150_scaffold_387_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30751..31950
DNA (1200bp) protein (400aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW40_9GAMM rbh
scnpilot_solids2_trim150_scaffold_387_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31989..32684)
DNA (696bp) protein (232aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW41_9GAMM rbh
pseudouridine synthase family protein
scnpilot_solids2_trim150_scaffold_387_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32880..33998)
DNA (1119bp) protein (373aa)
Outer membrane protein/peptidoglycan-associated (Lipo)protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW42_9GAMM rbh
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:EIL91433.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane protein/peptidoglycan-associated (lipo)protein
scnpilot_solids2_trim150_scaffold_387_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34310..35761)
DNA (1452bp) protein (484aa)
2-methylcitrate dehydratase {ECO:0000313|EMBL:EIL91434.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EIL91434.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW43_9GAMM rbh
scnpilot_solids2_trim150_scaffold_387_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35896..37080)
DNA (1185bp) protein (395aa)
methylitaconate delta2-delta3-isomerase (EC:5.3.3.6); K09788 hypothetical protein rbh
Methylitaconate delta2-delta3-isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW44_9GAMM rbh
Methylitaconate delta2-delta3-isomerase {ECO:0000313|EMBL:EIL91435.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_387_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37186..39780)
DNA (2595bp) protein (865aa)
Aconitate hydratase {ECO:0000313|EMBL:EIL91436.1}; EC=4.2.1.3 {ECO:0000313|EMBL:EIL91436.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] rbh
Aconitate hydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW45_9GAMM rbh
scnpilot_solids2_trim150_scaffold_387_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40175..40864
DNA (690bp) protein (230aa)
Integral membrane protein, terc family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW46_9GAMM rbh
Integral membrane protein, terc family {ECO:0000313|EMBL:EIL91437.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
integral membrane protein, YjbE family
Displaying items 1-30 of 34 in total

View Taxonomy