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scnpilot_solids2_trim150_scaffold_403

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_403_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35..244
DNA (210bp) protein (70aa)
Cold shock protein n=2 Tax=Rhodanobacter RepID=I4WY71_9GAMM
cold shock protein
Cold shock protein {ECO:0000313|EMBL:AGG89746.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_403_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

474..1256
DNA (783bp) protein (261aa)
Dinucleotide-utilizing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZY4_9GAMM
Dinucleotide-utilizing protein {ECO:0000313|EMBL:EIL92775.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
scnpilot_solids2_trim150_scaffold_403_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1353..2093)
DNA (741bp) protein (247aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.36 1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AGG89738.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AGG89738.1};; EC=1.1.1.36 {ECO:0000313|EMBL:AGG89738.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-ketoacyl-ACP reductase n=1 Tax=Dyella ginsengisoli RepID=UPI00034BF8C2
scnpilot_solids2_trim150_scaffold_403_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2348..4219
DNA (1872bp) protein (624aa)
Chaperone protein HtpG n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUD7_9GAMM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
molecular chaperone of HSP90 family
scnpilot_solids2_trim150_scaffold_403_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4458..5117)
DNA (660bp) protein (220aa)
DSBA oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIV7_9GAMM
putative dithiol-disulfide isomerase involved in polyketide biosynthesis
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_403_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5140..5760)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3L4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94055.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_403_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5839..7236)
DNA (1398bp) protein (466aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND65_9GAMM
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:AGG87792.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_403_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7340..8734)
DNA (1395bp) protein (465aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND65_9GAMM
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:AGG87792.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_403_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8955..9530)
DNA (576bp) protein (192aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE6_9GAMM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EIM03088.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nicotinamide mononucleotide transporter PnuC
scnpilot_solids2_trim150_scaffold_403_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9532..11745)
DNA (2214bp) protein (738aa)
TonB-dependent siderophore receptor n=1 Tax=Rhodanobacter denitrificans RepID=I4WY92_9GAMM
TonB-dependent siderophore receptor
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_403_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11943..13079)
DNA (1137bp) protein (379aa)
Putative homoserine kinase type II (Protein kinase fold) n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ57_9GAMM
putative homoserine kinase type II (protein kinase fold)
Putative homoserine kinase type II (Protein kinase fold) {ECO:0000313|EMBL:AGG89723.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_403_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13162..13752
DNA (591bp) protein (197aa)
Response regulator receiver protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W454_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EIL94245.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and a GGDEF domain
scnpilot_solids2_trim150_scaffold_403_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13745..14125
DNA (381bp) protein (127aa)
Heat shock protein 15 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W453_9GAMM
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
scnpilot_solids2_trim150_scaffold_403_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14170..16869)
DNA (2700bp) protein (900aa)
DNA mismatch repair protein MutS n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUF4_9GAMM rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA mismatch repair protein MutS rbh
scnpilot_solids2_trim150_scaffold_403_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17075..17959)
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas stutzeri NF13 RepID=M2VGW5_PSEST
LysR family transcriptional regulator {ECO:0000313|EMBL:AHY57470.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_403_16
unknown

Not on your lists

comp(18078..18215)
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_403_17
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18411..19076
DNA (666bp) protein (222aa)
Carboxymuconolactone decarboxylase n=1 Tax=Burkholderia ambifaria (strain MC40-6) RepID=B1Z1H2_BURA4 rbh
carboxymuconolactone decarboxylase rbh
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ACB66253.1}; Flags: Precursor;; TaxID=398577 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria (strain MC40-6).;"
scnpilot_solids2_trim150_scaffold_403_18

Not on your lists

19080..20390
DNA (1311bp) protein (437aa)
Aldo/keto reductase family oxidoreductase n=1 Tax=mine drainage metagenome RepID=T1A152_9ZZZZ rbh
Aldo/keto reductase family oxidoreductase {ECO:0000313|EMBL:EQD50582.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
aldo/keto reductase
scnpilot_solids2_trim150_scaffold_403_19
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20632..21681
DNA (1050bp) protein (350aa)
mannitol dehydrogenase (EC:1.1.1.255); K13979 uncharacterized zinc-type alcohol dehydrogenase-like protein [EC:1.-.-.-] rbh
Mannitol dehydrogenase {ECO:0000313|EMBL:AEF87797.1}; EC=1.1.1.255 {ECO:0000313|EMBL:AEF87797.1};; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
Mannitol dehydrogenase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AS11_DELSC rbh
scnpilot_solids2_trim150_scaffold_403_20
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21773..22414)
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:BAP57241.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Putative uncharacterized protein id=3730467 bin=GWF2_Nitrospirae_44_13 species=Trichodesmium erythraeum genus=Trichodesmium taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
scnpilot_solids2_trim150_scaffold_403_21
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22551..24284)
DNA (1734bp) protein (578aa)
Type IV secretion system protein VirD4 n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FKD8_9XANT
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:ENZ93834.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
virD4; type IV secretion system protein VirD4; K03205 type IV secretion system protein VirD4
scnpilot_solids2_trim150_scaffold_403_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24474..24983
DNA (510bp) protein (170aa)
Competence/damage-inducible protein CinA-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NQ15_9GAMM
competence/damage-inducible protein CinA-like protein
Competence/damage-inducible protein CinA-like protein {ECO:0000313|EMBL:AGG89716.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_403_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25127..26164
DNA (1038bp) protein (346aa)
Protein RecA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUG4_9GAMM rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein RecA rbh
scnpilot_solids2_trim150_scaffold_403_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26202..26705
DNA (504bp) protein (168aa)
Regulatory protein RecX n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W446_9GAMM
hypothetical protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_403_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26758..29406
DNA (2649bp) protein (883aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W445_9GAMM
scnpilot_solids2_trim150_scaffold_403_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29658..29912
DNA (255bp) protein (85aa)
Carbon storage regulator homolog n=1 Tax=Rhodanobacter sp. 115 RepID=I4W263_9GAMM
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
carbon storage regulator CsrA
scnpilot_solids2_trim150_scaffold_403_trna_1
unknown

Not on your lists

29986..30075
DNA (90bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_403_27
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30305..30862
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AFDD3
Uncharacterized protein {ECO:0000313|EMBL:GAN31968.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_403_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30928..31803
DNA (876bp) protein (292aa)
Aldo/keto reductase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA39_STAND
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ADH90826.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_403_29
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31823..32440)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F802C4
Uncharacterized protein {ECO:0000313|EMBL:KGM57746.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
transcriptional regulator
Displaying items 1-30 of 67 in total

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