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scnpilot_solids2_trim150_scaffold_404

Search features with annotation key words

Displaying items 31-60 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_404_31
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32971..33855
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X0_9GAMM
scnpilot_solids2_trim150_scaffold_404_32
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33924..35213
DNA (1290bp) protein (430aa)
FAD dependent oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X1_9GAMM
FAD dependent oxidoreductase {ECO:0000313|EMBL:EIL95212.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glycine/D-amino acid oxidase, deaminating
scnpilot_solids2_trim150_scaffold_404_33
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35216..35566
DNA (351bp) protein (117aa)
tRNA-binding protein n=1 Tax=Dyella japonica RepID=UPI0002FD56D9
tRNA-binding protein {ECO:0000313|EMBL:KFL37940.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
EMAP domain-containing protein
scnpilot_solids2_trim150_scaffold_404_34
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35702..36649)
DNA (948bp) protein (316aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X3_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL95214.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids2_trim150_scaffold_404_35
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

36876..38897
DNA (2022bp) protein (674aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQB4_CHIPD
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AHG87791.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
scnpilot_solids2_trim150_scaffold_404_36
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38974..41112)
DNA (2139bp) protein (713aa)
putative metalloendopeptidase; K07386 putative endopeptidase [EC:3.4.24.-]
Putative metalloendopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VN32_9GAMM
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL88623.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_404_37
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41807..44668
DNA (2862bp) protein (954aa)
Outer membrane cobalamin receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWB0_9GAMM
outer membrane cobalamin receptor protein
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:AGG90558.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_38
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44716..46203
DNA (1488bp) protein (496aa)
peptidase M28 n=1 Tax=Dyella ginsengisoli RepID=UPI00034B1594
Peptidase M28 {ECO:0000313|EMBL:GAN45600.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative aminopeptidase
scnpilot_solids2_trim150_scaffold_404_39
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46458..47543
DNA (1086bp) protein (362aa)
Chorismate mutase, type II n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P187_9BACT
Prephenate dehydrogenase {ECO:0000313|EMBL:KGM53524.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
prephenate dehydrogenase/chorismate mutase
scnpilot_solids2_trim150_scaffold_404_40
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47623..48753)
DNA (1131bp) protein (377aa)
cystathionine gamma-synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36B01
Cys/Met metabolism pyridoxal-phosphate-dependent protein rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN42469.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
scnpilot_solids2_trim150_scaffold_404_41
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48857..49408)
DNA (552bp) protein (184aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03082.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_404_42
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49581..50336)
DNA (756bp) protein (252aa)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRI0_9GAMM
methionine-S-sulfoxide reductase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_43
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50340..50942)
DNA (603bp) protein (201aa)
Methionine-R-sulfoxide reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJD3_9GAMM
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EIL87324.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
methionine-R-sulfoxide reductase
scnpilot_solids2_trim150_scaffold_404_44
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50984..52705)
DNA (1722bp) protein (574aa)
Redoxin domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJD4_9GAMM
Redoxin domain-containing protein {ECO:0000313|EMBL:EIL87325.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cytochrome c biogenesis protein
scnpilot_solids2_trim150_scaffold_404_45
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52840..53496
DNA (657bp) protein (219aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ99_9GAMM
RNA polymerase, sigma subunit, ECF family
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AGG89768.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_46
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53483..54154
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NI39_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89767.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_47
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54469..55563
DNA (1095bp) protein (365aa)
Catalase-related peroxidase {ECO:0000256|PIRNR:PIRNR000296}; EC=1.11.1.- {ECO:0000256|PIRNR:PIRNR000296};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative chaperone protein; K03781 catalase [EC:1.11.1.6]
Catalase-related peroxidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTG9_9GAMM
scnpilot_solids2_trim150_scaffold_404_48
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55560..56120
DNA (561bp) protein (187aa)
Putative cytochrome B561 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGF8_9GAMM
Putative cytochrome B561 {ECO:0000313|EMBL:EIL98549.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative [Ni] hydrogenase, b-type cytochrome subunit
scnpilot_solids2_trim150_scaffold_404_49
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56225..57430)
DNA (1206bp) protein (402aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIL90478.1}; EC=2.3.1.9 {ECO:0000313|EMBL:EIL90478.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Acetyl-CoA acetyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD7_9GAMM rbh
acetyl-CoA acetyltransferase rbh
scnpilot_solids2_trim150_scaffold_404_50
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57595..59982)
DNA (2388bp) protein (796aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AGG88907.1}; EC=1.1.1.35 {ECO:0000313|EMBL:AGG88907.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXM8_9GAMM
scnpilot_solids2_trim150_scaffold_404_51
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60039..60701)
DNA (663bp) protein (221aa)
Transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRU8_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL89939.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_404_52
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60887..61312
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC6_9GAMM
scnpilot_solids2_trim150_scaffold_404_53
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61345..62526
DNA (1182bp) protein (394aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Rhodanobacter denitrificans RepID=I4WXN1_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_54
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62516..63307
DNA (792bp) protein (264aa)
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Rhodanobacter denitrificans RepID=I4WXN2_9GAMM
type IV pilus biogenesis/stability protein PilW
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_55
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63304..64338
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91777.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_404_56
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64515..65183
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90471.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_404_57
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65180..66397
DNA (1218bp) protein (406aa)
Outer membrane protein assembly factor BamB n=1 Tax=Rhodanobacter denitrificans RepID=M4NDQ2_9GAMM
Beta-barrel assembly machine subunit BamB
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_58
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66586..67989
DNA (1404bp) protein (468aa)
GTPase Der n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTC8_9GAMM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ribosome-associated GTPase EngA
scnpilot_solids2_trim150_scaffold_404_59
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68087..68956
DNA (870bp) protein (290aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX41_9GAMM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_404_60
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69036..70496
DNA (1461bp) protein (487aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A3719
Displaying items 31-60 of 64 in total

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