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scnpilot_solids2_trim150_scaffold_404

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_404_1
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305..1303
DNA (999bp) protein (333aa)
Eukaryotic-type low-affinity urea transporter n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MN59_9SPHN rbh
Eukaryotic-type low-affinity urea transporter {ECO:0000313|EMBL:CCW17042.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Urea transporter; K08717 urea transporter rbh
scnpilot_solids2_trim150_scaffold_404_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1320..2606)
DNA (1287bp) protein (429aa)
O-acetylhomoserine (Thiol)-lyase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] rbh
O-acetylhomoserine/o-acetylserine sulfhydrylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL39_9GAMM
O-acetylhomoserine/o-acetylserine sulfhydrylase {ECO:0000313|EMBL:EIL87930.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_404_3
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3134..4153)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JU19_BURVG
Aspergillopepsin-2 {ECO:0000313|EMBL:EWM11073.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_404_4
unknown

Not on your lists

comp(4377..4664)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_404_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4624..4998)
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUM0_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids2_trim150_scaffold_404_6
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(5073..7391)
DNA (2319bp) protein (773aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WJ94_CHLAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY34371.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
scnpilot_solids2_trim150_scaffold_404_7
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7522..8319)
DNA (798bp) protein (266aa)
Two component transcriptional regulator, AraC family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZY3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFX67710.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
AraC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_404_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8577..9143)
DNA (567bp) protein (189aa)
SsrA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T8_9GAMM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SsrA-binding protein
scnpilot_solids2_trim150_scaffold_404_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9174..9605
DNA (432bp) protein (144aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI76_9GAMM
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EIL99167.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
oligoketide cyclase/lipid transport protein
scnpilot_solids2_trim150_scaffold_404_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9598..9879
DNA (282bp) protein (94aa)
Protein RnfH n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI77_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9896..10357)
DNA (462bp) protein (154aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH5_9GAMM
small protein A (tmRNA-binding)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10432..10854
DNA (423bp) protein (141aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH6_9GAMM
Fe2+/Zn2+ uptake regulation protein
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:AGG88956.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10991..12664)
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12807..13868
DNA (1062bp) protein (354aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI0_9GAMM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13948..14484
DNA (537bp) protein (179aa)
Protein GrpE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTX3_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
molecular chaperone GrpE (heat shock protein)
scnpilot_solids2_trim150_scaffold_404_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14615..16537
DNA (1923bp) protein (641aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI3_9GAMM
chaperone protein DnaK
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16667..17788
DNA (1122bp) protein (374aa)
Chaperone protein DnaJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI87_9GAMM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chaperone protein DnaJ
scnpilot_solids2_trim150_scaffold_404_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17888..18655
DNA (768bp) protein (256aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Rhodanobacter denitrificans RepID=M4NH27_9GAMM
scnpilot_solids2_trim150_scaffold_404_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18655..19560
DNA (906bp) protein (302aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
pyridoxal kinase; K00868 pyridoxine kinase [EC:2.7.1.35] rbh
pyridoxine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003667AE7 rbh
scnpilot_solids2_trim150_scaffold_404_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19599..20294)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFU7_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20507..21643
DNA (1137bp) protein (379aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6V6_9GAMM
carbamoyl-phosphate synthase small subunit
scnpilot_solids2_trim150_scaffold_404_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21636..24863
DNA (3228bp) protein (1076aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI8_9GAMM
carbamoyl-phosphate synthase, large subunit
scnpilot_solids2_trim150_scaffold_404_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24860..25336
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI9_9GAMM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25728..26408
DNA (681bp) protein (227aa)
Cytidylate kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSL1_9GAMM
cytidylate kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_404_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26577..28259
DNA (1683bp) protein (561aa)
30S ribosomal protein S1 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI99_9GAMM rbh
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SSU ribosomal protein S1P rbh
scnpilot_solids2_trim150_scaffold_404_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28333..28632
DNA (300bp) protein (100aa)
Integration host factor subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSL3_9GAMM
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
integration host factor, beta subunit
scnpilot_solids2_trim150_scaffold_404_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28735..28995
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99192.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF1049)
scnpilot_solids2_trim150_scaffold_404_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28992..30164
DNA (1173bp) protein (391aa)
Tetratricopeptide repeat protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXJ8_9GAMM
putative N-acetylglucosaminyl transferase
Lipopolysaccharide assembly protein B {ECO:0000256|HAMAP-Rule:MF_00994}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_404_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30166..31185
DNA (1020bp) protein (340aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA3_9GAMM
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase {ECO:0000313|EMBL:EIL99194.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
scnpilot_solids2_trim150_scaffold_404_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31172..32974
DNA (1803bp) protein (601aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA4_9GAMM
putative nucleoside-diphosphate sugar epimerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 64 in total

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